View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1590_high_2 (Length: 729)
Name: NF1590_high_2
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 17 - 716
Target Start/End: Complemental strand, 48483266 - 48482568
Alignment:
| Q |
17 |
cataggggctaaggttttcttgacagtttgttgtcaggtgattttagctactagcctgcaatattcttgtagcagtagctaggaactaatttgcatgctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48483266 |
cataggggctaaggttttcttgacagtt-gttgtcaggtgattttagctactagcctgcaatattcttgtagcagtagctaggaactaatttgcatgctt |
48483168 |
T |
|
| Q |
117 |
gttttgataactaaatgaattctgtcagggggtataaaaaatgacaattatacaatataannnnnnnnnnnnngtcattccattccccaacgttatttca |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48483167 |
gttttgataactaaatgaattctgtcggggggtataaaaaatgacaatcatacaatataatttttttatttttgtcattccattccccaacgttatttca |
48483068 |
T |
|
| Q |
217 |
ttacccaatatgacttatacaaaacactttttactcaagttattggggtccttttctagttgtgttacacttttactcacattcatttttcctatctttc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48483067 |
ttacccaatatgacttatacaaaacactttttactcaagttattggggtccttttctagttgtgttacacttttactcacattcattttttctatctttc |
48482968 |
T |
|
| Q |
317 |
ttgtccgcgttggtgccagacttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattttcacgtgatgtgtgca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48482967 |
ttgtccgcgttggtgccagacttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattttcacgtgatgtgtgca |
48482868 |
T |
|
| Q |
417 |
tcaaggatgggatatagcatggcggtaagtatgatgatccttttacttaaatttaaactagtccttgatctgaagctgctactttttcttctgaatttgc |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48482867 |
tcaaggatgggatatagcatggcggtaagtatgatgatccttttacttaaatttaaactagtccttgatctgaagctgctactttttcttctgaatttgc |
48482768 |
T |
|
| Q |
517 |
tcnnnnnnnggagggcagcaaagtcatttatgtccataatcaatatatagatttttatggaagtaagcatttagttacatggctattacttccgctgctg |
616 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48482767 |
tctttttttggagggcagcaaagtcatttatgtccataatcaatatatagatttttatggaagtaagcatttagttacatggctattacttccgctgctg |
48482668 |
T |
|
| Q |
617 |
ggaaaatatgttgatattgtttaaatgtacagttgcgttctacagtgaagaaggggactcaaataacacagacgctaatatattgtgcagttcacaggtt |
716 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48482667 |
ggaaaatatgttgatattgtttaaatgtacagttgcgttctacagtgaagaaggggactcaaataacacagacgctaatatattgcgcagttcacaggtt |
48482568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 333 - 421
Target Start/End: Original strand, 10037573 - 10037661
Alignment:
| Q |
333 |
cagacttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattttcacgtgatgtgtgcatcaag |
421 |
Q |
| |
|
||||| ||||| || ||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||| || ||||| |||||||| |
|
|
| T |
10037573 |
cagacctgtgtaatttgtaaacaaagccatggttcttgtacaagttgttgcaagtgttctactcattttcatgtaatgtgcgcatcaag |
10037661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University