View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_20 (Length: 434)
Name: NF1590_high_20
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 260 - 420
Target Start/End: Original strand, 24813425 - 24813585
Alignment:
| Q |
260 |
cagtcaaaaaacatggagcttggtaactgcggtcacataaagaaatgatgtaaacacaattttctttttcataaaccacgttctagacaagtacatgttt |
359 |
Q |
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| T |
24813425 |
cagtcaaaaaacatggagcttgttaactacggtcacataaagaagtgctgtaaacacaattttctttttcataaaccacgttttagacaagtaaatgatt |
24813524 |
T |
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| Q |
360 |
tgttttggtaaaagaaaacttaatacattttattaatgatcaaatgatacatgaataattt |
420 |
Q |
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| T |
24813525 |
tgttttggtaaaagaaaacttaatacattttattaataatcaaatgatactggaataattt |
24813585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 24815733 - 24815852
Alignment:
| Q |
41 |
atgtcgaattggagtaaattttgatgaataatgatatacgtacgagtattgaaaaaatgtagcagtagttttgagttgactgacattctggagacaatca |
140 |
Q |
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| T |
24815733 |
atgtcgaattggagtaaattttgaagaataatgatatatgtacgagtattgaaaaaatgtagtagtagttttgagttgactgacatgctggaggcaatca |
24815832 |
T |
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| Q |
141 |
cacggggtcctaacatggtc |
160 |
Q |
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| T |
24815833 |
cacggggtcctaacatggtc |
24815852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 8338214 - 8338247
Alignment:
| Q |
2 |
gggttttccacaggatcttcctttcttatattaa |
35 |
Q |
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| T |
8338214 |
gggttttccacaggatcttcctttcttatattaa |
8338247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 10235495 - 10235528
Alignment:
| Q |
2 |
gggttttccacaggatcttcctttcttatattaa |
35 |
Q |
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| T |
10235495 |
gggttttccacatgatcttcctttcttatattaa |
10235528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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