View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_21 (Length: 431)
Name: NF1590_high_21
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_21 |
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| [»] scaffold0142 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 22 - 417
Target Start/End: Complemental strand, 18481577 - 18481179
Alignment:
| Q |
22 |
aataatgtcctgatttagacaatttatttcttagcattaacttggtcttaacaat---aagtgtcatttcataacaagcttatagtctttcaatatattt |
118 |
Q |
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| T |
18481577 |
aataatgtcctgatttagacaatttatttcttagcattaacttggtcttaacaatgccaagtttcatttcataacaagcttatagtctttcaatatattt |
18481478 |
T |
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| Q |
119 |
gccattttgtgttaaaatattttattgtcaacaagtgattcccttggcaaattgttaatggaaaaaacttgaaaaatttttaggatatgaaatttcagga |
218 |
Q |
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| T |
18481477 |
gccattttgtgttaaaatattttattgtcaacaagtgattaccttggcaaattgttaatggaaaaaacttgaaaaaattataggatatgaaatttcagga |
18481378 |
T |
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| Q |
219 |
catacaccattattgtgcaaacaaattaagatataaaatggctccctcgaacttgaagacacttgaaatggaaaacttggaataacctcttgtcttctgc |
318 |
Q |
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| T |
18481377 |
catacacaattgttgtgcaaacaaattaagatataaaatggctccctcgaacttgaagacacttgaattggaaaacttggaataacctcttgtcttctgc |
18481278 |
T |
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| Q |
319 |
ccccacatgttttagcattaaccattctgtcaaatggagttctctaagaaccaatttatctttgatcttcatccactcttgtaatctctgtttagaaat |
417 |
Q |
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| T |
18481277 |
ccccacatgttttagcattaaccgttctgtcaaatggcgttctctaagaaccaatttatctttgatcttcatccactcttgtaatctctgtttagaaat |
18481179 |
T |
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Back To:
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Target: scaffold0142 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0142
Description:
Target: scaffold0142; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 14588 - 14642
Alignment:
| Q |
143 |
ttgtcaacaagtgattcccttggcaaattgttaatggaaaaaacttgaaaaattt |
197 |
Q |
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| T |
14588 |
ttgtcaaaaagtaattcccttgtcaaattgttaacggcaaaaatttgaaaaattt |
14642 |
T |
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