View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1590_high_23 (Length: 429)
Name: NF1590_high_23
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 17 - 422
Target Start/End: Complemental strand, 41090967 - 41090562
Alignment:
| Q |
17 |
tttcattcttgttatgttaatgcgtcactttaacaaatctgattctgaaatcggaaaacaaaacttcaatctttcttccgatttcacccatttctcaatc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41090967 |
tttcattcttgttatgttaatgcgtcactttaacaaatctgattctgaaatcggaaaagaaaacttcaatctttcttccgatttcacccatttctcaatc |
41090868 |
T |
|
| Q |
117 |
caagttacacctttttcttcaccttctcctcatcattttcaccatgaacaacgcttctcaagcaacactccatcatcaccatctcaaacacctacacaca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41090867 |
caagttacacctttttcttcaccttctcctcatcattttcaccatgaacaacgcttctcaagcaacactccatcatcaccttctcaaacacctacacaca |
41090768 |
T |
|
| Q |
217 |
acaaaacccatcaaaacaaaccttcttttacaataccctttacctcaaagtttcaatctttcaagcttctcacacgttttcatttcatcatcttcgtatc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41090767 |
acaaaacccatcaaaacaaaccttcttttacaataccctttacctcaaagtttcaatctttcaagcttctcacacgttttcatttcatcatcttcgtatc |
41090668 |
T |
|
| Q |
317 |
tttaacatctctttactttctcttttcacgtccaactcttcttgattttctctttgtgctacttttctcatcagcactttttgtttctatcaacctattc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41090667 |
tttaacatctctttactttctcttttcacgtccaactcttcttgattttctctttgtgctacttttctcatcagcactttttgtttctatcaacctattc |
41090568 |
T |
|
| Q |
417 |
atctca |
422 |
Q |
| |
|
||||| |
|
|
| T |
41090567 |
ttctca |
41090562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University