View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_26 (Length: 421)
Name: NF1590_high_26
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_26 |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 237 - 404
Target Start/End: Complemental strand, 2038280 - 2038118
Alignment:
| Q |
237 |
aggcagttgaaacaaagcaaaagtacttatgttccctgtatgatatacgataaaatagggaatgattttgtttggttcatcattaataattgacatgaat |
336 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
2038280 |
aggcagttgaaacaaagcaaaagtacttgtgttccctgtatgatatacgataaaatagggaatgattttggtt-----atcattaataattgacatgaat |
2038186 |
T |
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| Q |
337 |
agtgatagtgattataggattcttacttgtctccctagagtaaatgtttgttttctctccttctcttt |
404 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2038185 |
agtgatagtgatgataggattcttacttgtctccctagagtgaatgtttgttttctctccttctcttt |
2038118 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 2038504 - 2038367
Alignment:
| Q |
13 |
aaaataacttctagaacttaacactttataagatcaataaggaaaaagaatctaaacttgaaatggaattgtaaagattgagaaaagagtgtaatatctc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2038504 |
aaaataacttctagaacttaacactttataagatcaataaggaaaaagaatctaaacttgaaatggaattgtaaagattgagaaaagagtggaatatctc |
2038405 |
T |
|
| Q |
113 |
ttacttgttgacgatgaatttcttatagtggactctaa |
150 |
Q |
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||||||| |||||||||||||||||||||||||||||| |
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| T |
2038404 |
ttacttggtgacgatgaatttcttatagtggactctaa |
2038367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 237 - 399
Target Start/End: Original strand, 29963802 - 29963961
Alignment:
| Q |
237 |
aggcagttgaaacaaagcaaaagtacttatgtt-ccctgtatgatatacgataaaatagggaatgattttgtttggttcatcattaataattgacatgaa |
335 |
Q |
| |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29963802 |
aggcagttgaaacaaagcaaaagtacttgtgtttccctgtatgatatacgataaaatagggaatgattttg----gttcatcattaataattgacatgaa |
29963897 |
T |
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| Q |
336 |
tagtgatagtgattataggattcttacttgtctccctagagtaaatgtttgttttctctccttc |
399 |
Q |
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||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29963898 |
gagtgataatgatgataggattcttacttgtctccctagagtgaatgtttgttttctctccttc |
29963961 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 237 - 399
Target Start/End: Original strand, 34518532 - 34518693
Alignment:
| Q |
237 |
aggcagttgaaacaaagcaaaagtacttatgttccctgtatgatatacgataaaatagggaatgattttgtttggttcatcattaataattgacatgaat |
336 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||| || | ||| |||||||||||||||||| |
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| T |
34518532 |
aggcagttgaaacaaagcaaaggtacttgtgttccctgtatgataaacgataaaatagggaatgattttggttcat-cattattaataattgacatgaag |
34518630 |
T |
|
| Q |
337 |
agtgatagtgattataggattcttacttgtctccctagagtaaatgtttgttttctctccttc |
399 |
Q |
| |
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||||||| |||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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|
| T |
34518631 |
agtgataatgatgataggattcttacttgtctccctagagtgaatatttgttttctctccttc |
34518693 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 237 - 399
Target Start/End: Original strand, 188817 - 188975
Alignment:
| Q |
237 |
aggcagttgaaacaaagcaaaagtacttatgttccctgtatgatatacgataaaatagggaatgattttgtttggttcatcattaataattgacatgaat |
336 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| | ||||| |
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| T |
188817 |
aggcagttgaaacaaagcaaaagtacttgtgttccctctatgatatacgataaaatagggaatgat----tctggttcatcattaataattaaaatgaag |
188912 |
T |
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| Q |
337 |
agtgatagtgattataggattcttacttgtctccctagagtaaatgtttgttttctctccttc |
399 |
Q |
| |
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| | ||| |||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
188913 |
atttataatgatgataggattcttacttgtctccctaaagtgaatgtttgttttctctccttc |
188975 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 239 - 399
Target Start/End: Complemental strand, 44668002 - 44667844
Alignment:
| Q |
239 |
gcagttgaaacaaagcaaaagta-cttatgttccctgtatgatatacgataaaa-tagggaatgattttgtttggttcatcattaataattgacatgaat |
336 |
Q |
| |
|
|||||||||||||||||||| || ||| ||| |||| |||||| |||||||| ||||||||||||||| |||||||| ||||| ||| ||||| |
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| T |
44668002 |
gcagttgaaacaaagcaaaaataacttgtgtgccctaaatgatactcgataaaaatagggaatgattttg----gttcatcaataatagttgcaatgaag |
44667907 |
T |
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| Q |
337 |
agtgatagtgattataggattcttacttgtctccctagagtaaatgtttgttttctctccttc |
399 |
Q |
| |
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||| ||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44667906 |
agtaataatgataataggattcttacttgtctccctagagtgaatgtttgttttctctccttc |
44667844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 35219 - 35261
Alignment:
| Q |
13 |
aaaataacttctagaacttaacactttata-agatcaataagg |
54 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35219 |
aaaataacttctagaacttaacactttatatcgatcaataagg |
35261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 12539015 - 12539084
Alignment:
| Q |
239 |
gcagttgaaacaaagcaaaagt-acttatgttccctgtatgatatacgat-aaaatagggaatgattttg |
306 |
Q |
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|||||||||||||||||||| | |||| ||| |||| ||||||| |||| ||||||||||||||||||| |
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| T |
12539015 |
gcagttgaaacaaagcaaaaataacttgtgtgccctatatgatactcgataaaaatagggaatgattttg |
12539084 |
T |
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