View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1590_high_27 (Length: 418)
Name: NF1590_high_27
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 403
Target Start/End: Complemental strand, 39625720 - 39625319
Alignment:
| Q |
13 |
aatatagggaaaaagaagttctagtgttatcataactaaccagtaatcacctaacaa-ctatttaaggaaatttaaactaagatcgaaagacctagttat |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39625720 |
aatataggaaaaaagaagttctagtgttatcataactaaccagtaatcacctaacaaactatttaaggaaatttaaactaagatcgaaagacctagttat |
39625621 |
T |
|
| Q |
112 |
tcatcaaaattagtattagcttacaaattaaacagagaaatattgcatcggaattgattaagattgatgtgcgatgggaaggttgagtaaagaagagaag |
211 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39625620 |
tcatcaaaattagtattagcttacaaa-----cagagaaatattgcatcggaattgattaagattgatgtgcgatgggaatgttgagtaaagaagagaag |
39625526 |
T |
|
| Q |
212 |
gaaaaagcagc---------------gacaatggtggcgacagtgagaggaagtaaacgaaagggtattgcaaagagttggatggtagtatttgaaacag |
296 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39625525 |
gaaaaagcagcagtagggatggcagcgacaatggtggcgacagtgagaggaagtaaacaaaagggtattgcaaagagttggatggtagtatttgaaacag |
39625426 |
T |
|
| Q |
297 |
gtgaatcacgtgtcgaggatatcgacaaacactccatcatgcgacgaacaggtttacctgcacgtgaccttagagtctttgatacaaagctttctcaacc |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39625425 |
gtgaatcacgtgtcgaggatatcgacaaacactccatcatgcgacgaacaggtttacctgcacgtgaccttagagtctttgatacaaagctttctcagcc |
39625326 |
T |
|
| Q |
397 |
ttcttct |
403 |
Q |
| |
|
||||||| |
|
|
| T |
39625325 |
ttcttct |
39625319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 403
Target Start/End: Complemental strand, 39635270 - 39634869
Alignment:
| Q |
13 |
aatatagggaaaaagaagttctagtgttatcataactaaccagtaatcacctaacaa-ctatttaaggaaatttaaactaagatcgaaagacctagttat |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39635270 |
aatataggaaaaaagaagttctagtgttatcataactaaccagtaatcacctaacaaactatttaaggaaatttaaactaagatcgaaagacctagttat |
39635171 |
T |
|
| Q |
112 |
tcatcaaaattagtattagcttacaaattaaacagagaaatattgcatcggaattgattaagattgatgtgcgatgggaaggttgagtaaagaagagaag |
211 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39635170 |
tcatcaaaattagtattagcttacaaa-----cagagaaatattgcatcggaattgattaagattgatgtgcgatgggaatgttgagtaaagaagagaag |
39635076 |
T |
|
| Q |
212 |
gaaaaagcagc---------------gacaatggtggcgacagtgagaggaagtaaacgaaagggtattgcaaagagttggatggtagtatttgaaacag |
296 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39635075 |
gaaaaagcagcagtagggatggcagcgacaatggtggcgacagtgagaggaagtaaacaaaagggtattgcaaagagttggatggtagtatttgaaacag |
39634976 |
T |
|
| Q |
297 |
gtgaatcacgtgtcgaggatatcgacaaacactccatcatgcgacgaacaggtttacctgcacgtgaccttagagtctttgatacaaagctttctcaacc |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39634975 |
gtgaatcacgtgtcgaggatatcgacaaacactccatcatgcgacgaacaggtttacctgcacgtgaccttagagtctttgatacaaagctttctcagcc |
39634876 |
T |
|
| Q |
397 |
ttcttct |
403 |
Q |
| |
|
||||||| |
|
|
| T |
39634875 |
ttcttct |
39634869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 269 - 371
Target Start/End: Complemental strand, 40276733 - 40276631
Alignment:
| Q |
269 |
aagagttggatggtagtatttgaaacaggtgaatcacgtgtcgaggatatcgacaaacactccatcatgcgacgaacaggtttacctgcacgtgacctta |
368 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| || || ||||| ||||||||||||||||||| ||||||||| |||||| | |||||||||| |
|
|
| T |
40276733 |
aagagttggatggtagtatcagagacaggtgaatcacgcgttgaagatattgacaaacactccatcatgcaacgaacagggttacctacgcgtgacctta |
40276634 |
T |
|
| Q |
369 |
gag |
371 |
Q |
| |
|
||| |
|
|
| T |
40276633 |
gag |
40276631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University