View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_29 (Length: 408)
Name: NF1590_high_29
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 43170272 - 43170661
Alignment:
| Q |
1 |
aaaaccacacaaacatgagagtagagaacaatttcaagtttaaaaacaatacaaagaacacgagcagcatttacccgtgtcatagtagatgtatcccaga |
100 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
43170272 |
aaaaccacacaaacatgagaatagagaaaaatttcaagtttaaaaacaatacaaagaacacaagcag--tttacccgtgtcatagtagatgtatcccaga |
43170369 |
T |
|
| Q |
101 |
gctggacaatggaattcatgaaaccaatggcttaaatgtgtccatctggctcccagctaacacttgtgataggaccatcttccagcgttgtagggagagc |
200 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43170370 |
gctggacaatggaattcatcaaaccaatggctaaaatgtgtccatctggctgccagctaacacttgtgataggaccatcttccagcgttgtagggagagc |
43170469 |
T |
|
| Q |
201 |
aacagaatcatagaaaccatcggaatcactacaaagaacaactgtatcattgagtgctatggaaaggacaccagttctaccccagtctaataaattcaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43170470 |
aacagaatcatagaaaccatcggaatcactacaaagaacaactatatcattgagtgctatggaaaggacaccagttctaccccaatctaataaattcaag |
43170569 |
T |
|
| Q |
301 |
gggaaacattccaagatatctgtggcattcaaagttatctcacaactctgcaaaatcattttcac--agacatcaaaaaacatgcaaaattg |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
43170570 |
gggaaacattccaagatatctgtggcattcaaagttatctcacaactctgcaaaatcattttcacaaacacatcaaaaaacatgcaaaattg |
43170661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 43218064 - 43217675
Alignment:
| Q |
1 |
aaaaccacacaaacatgagagtagagaacaatttcaagtttaaaaacaatacaaagaacacgagcagcatttacccgtgtcatagtagatgtatcccaga |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
43218064 |
aaaaccacacaaacatgagaatagagaacaatttcaagtttaaaaacaatacaaagaacacaagcag--tttacccgtgtcatagtagatgtatcccaga |
43217967 |
T |
|
| Q |
101 |
gctggacaatggaattcatgaaaccaatggcttaaatgtgtccatctggctcccagctaacacttgtgataggaccatcttccagcgttgtagggagagc |
200 |
Q |
| |
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||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43217966 |
gctggacaatggaattcatcaaaccaatggctaaaatgtgtccatctggctgccagctaacacttgtgataggaccatcttccagcgttgtagggagagc |
43217867 |
T |
|
| Q |
201 |
aacagaatcatagaaaccatcggaatcactacaaagaacaactgtatcattgagtgctatggaaaggacaccagttctaccccagtctaataaattcaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43217866 |
aacagaatcatagaaaccatcggaatcactacaaagaacaacaatatcattgagtgctatggaaaggacaccagttctaccccaatctaataaattcaag |
43217767 |
T |
|
| Q |
301 |
gggaaacattccaagatatctgtggcattcaaagttatctcacaactctgcaaaatcattttcac--agacatcaaaaaacatgcaaaattg |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
43217766 |
gggaaacattccaagatatctgtggcattcaaagttatctcacaactctgcaaaatcattttcacaaacacatcaaaaaacatgcaaaattg |
43217675 |
T |
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