View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_high_34 (Length: 370)

Name: NF1590_high_34
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_high_34
NF1590_high_34
[»] chr7 (9 HSPs)
chr7 (10-310)||(35966539-35966839)
chr7 (10-310)||(35987951-35988251)
chr7 (10-310)||(43585940-43586240)
chr7 (10-252)||(8989055-8989297)
chr7 (310-370)||(35966334-35966394)
chr7 (310-370)||(35987746-35987806)
chr7 (310-370)||(43586385-43586445)
chr7 (108-193)||(35942328-35942413)
chr7 (312-360)||(35927042-35927090)
[»] chr6 (2 HSPs)
chr6 (46-310)||(26257114-26257378)
chr6 (310-370)||(26257523-26257583)
[»] chr8 (5 HSPs)
chr8 (10-310)||(43444628-43444928)
chr8 (46-290)||(18014300-18014544)
chr8 (310-370)||(43445073-43445133)
chr8 (310-370)||(18014709-18014769)
chr8 (312-360)||(26767364-26767412)
[»] chr4 (2 HSPs)
chr4 (50-311)||(16942101-16942363)
chr4 (310-370)||(16942507-16942567)
[»] chr1 (3 HSPs)
chr1 (46-135)||(24012681-24012770)
chr1 (312-360)||(9791793-9791841)
chr1 (312-360)||(45995254-45995302)
[»] chr3 (1 HSPs)
chr3 (312-360)||(26709120-26709168)


Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 310
Target Start/End: Complemental strand, 35966839 - 35966539
Alignment:
10 atgaaaatgaggtgtttatttgccnnnnnnnntatacaaaagaaatattgaagaaatttcagatggaggagtgcaaagtagttagcacaccaatgaacca 109  Q
    |||||||||||||||| |||||||        ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35966839 atgaaaatgaggtgttcatttgccaaaaaaaatatgcaaaagaaatattgaagaaatttcagatggaggagtgcaaagtagttagcacaccaatgaacca 35966740  T
110 aaaggaaaagtttagcaaggaagatgatgctgataaaattgacgaaggatattataggagcttgattggatgtttaatgtatctcacagcaacaaggcca 209  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35966739 aaaggaaaagtttagcaaggaagatggtgctgataaaattgacgaaggatattataggagcttgattggatgtttaatgtatctcacagcaacaaggcca 35966640  T
210 gatattctatttgctataagtcttctctctcggtttatgcattgtgctagtgaaatgcatttgatagcagcaaaaagaatactaaggtatattaaaggta 309  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
35966639 gatattctatttgctgtaagtcttctctctcggtttatgcattgtgctagtgaaatgcatttgatagcagcaaaaagaatactgaggtatattaaaggta 35966540  T
310 c 310  Q
    |    
35966539 c 35966539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 310
Target Start/End: Complemental strand, 35988251 - 35987951
Alignment:
10 atgaaaatgaggtgtttatttgccnnnnnnnntatacaaaagaaatattgaagaaatttcagatggaggagtgcaaagtagttagcacaccaatgaacca 109  Q
    |||||||||||||||| |||||||        ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35988251 atgaaaatgaggtgttcatttgccaaaaaaaatatgcaaaagaaatattgaagaaatttcagatggaggagtgcaaagtagttagcacaccaatgaacca 35988152  T
110 aaaggaaaagtttagcaaggaagatgatgctgataaaattgacgaaggatattataggagcttgattggatgtttaatgtatctcacagcaacaaggcca 209  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35988151 aaaggaaaagtttagcaaggaagatggtgctgataaaattgacgaaggatattataggagcttgattggatgtttaatgtatctcacagcaacaaggcca 35988052  T
210 gatattctatttgctataagtcttctctctcggtttatgcattgtgctagtgaaatgcatttgatagcagcaaaaagaatactaaggtatattaaaggta 309  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
35988051 gatattctatttgctgtaagtcttctctctcggtttatgcattgtgctagtgaaatgcatttgatagcagcaaaaagaatactgaggtatattaaaggta 35987952  T
310 c 310  Q
    |    
35987951 c 35987951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 310
Target Start/End: Original strand, 43585940 - 43586240
Alignment:
10 atgaaaatgaggtgtttatttgccnnnnnnnntatacaaaagaaatattgaagaaatttcagatggaggagtgcaaagtagttagcacaccaatgaacca 109  Q
    |||||||||||||||| |||||||        ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43585940 atgaaaatgaggtgttcatttgccaaaaaaaatatgcaaaagaaatattgaagaaatttcagatggaggagtgcaaagtagttagcacaccaatgaacca 43586039  T
110 aaaggaaaagtttagcaaggaagatgatgctgataaaattgacgaaggatattataggagcttgattggatgtttaatgtatctcacagcaacaaggcca 209  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43586040 aaaggaaaagtttagcaaggaagatggtgctgataaaattgacgaaggatattataggagcttgattggatgtttaatgtatctcacagcaacaaggcca 43586139  T
210 gatattctatttgctataagtcttctctctcggtttatgcattgtgctagtgaaatgcatttgatagcagcaaaaagaatactaaggtatattaaaggta 309  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
43586140 gatattctatttgctgtaagtcttctctctcggtttatgcattgtgctagtgaaatgcatttgatagcagcaaaaagaatactgaggtatattaaaggta 43586239  T
310 c 310  Q
    |    
43586240 c 43586240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 8989055 - 8989297
Alignment:
10 atgaaaatgaggtgtttatttgccnnnnnnnntatacaaaagaaatattgaagaaatttcagatggaggagtgcaaagtagttagcacaccaatgaacca 109  Q
    |||||||||||||||| |||||||        ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8989055 atgaaaatgaggtgttcatttgccaaaaaaaatatgcaaaagaaatattgaagaaatttcagatggaggagtgcaaagtagttagcacaccaatgaacca 8989154  T
110 aaaggaaaagtttagcaaggaagatgatgctgataaaattgacgaaggatattataggagcttgattggatgtttaatgtatctcacagcaacaaggcca 209  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8989155 aaaggaaaagtttagcaaggaagatggtgctgataaaattgacgaaggatattataggagcttgattggatgtttaatgtatctcacagcaacaaggcca 8989254  T
210 gatattctatttgctataagtcttctctctcggtttatgcatt 252  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
8989255 gatattctatttgctgtaagtcttctctctcggtttatgcatt 8989297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 35966394 - 35966334
Alignment:
310 cacaaagaagcaagagattgtagcacaatccactgcagaagctgaattcatagcagcaaca 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35966394 cacaaagaagcaagagattgtagcacaatccactgcagaagctgaattcatagcagcaaca 35966334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 35987806 - 35987746
Alignment:
310 cacaaagaagcaagagattgtagcacaatccactgcagaagctgaattcatagcagcaaca 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35987806 cacaaagaagcaagagattgtagcacaatccactgcagaagctgaattcatagcagcaaca 35987746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 310 - 370
Target Start/End: Original strand, 43586385 - 43586445
Alignment:
310 cacaaagaagcaagagattgtagcacaatccactgcagaagctgaattcatagcagcaaca 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43586385 cacaaagaagcaagagattgtagcacaatccactgcagaagctgaattcatagcagcaaca 43586445  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 35942328 - 35942413
Alignment:
108 caaaaggaaaagtttagcaaggaagatgatgctgataaaattgacgaaggatattataggagcttgattggatgtttaatgtatct 193  Q
    |||||||| ||||| | |||||| ||||  ||||||||| |||| ||||   ||| ||| ||||||||||||||| ||||||||||    
35942328 caaaaggagaagttcatcaaggatgatggggctgataaagttgatgaagctcattttagaagcttgattggatgtctaatgtatct 35942413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 35927090 - 35927042
Alignment:
312 caaagaagcaagagattgtagcacaatccactgcagaagctgaattcat 360  Q
    ||||||| ||||| ||||||||||| || ||||||||||| ||||||||    
35927090 caaagaaacaagatattgtagcacagtcaactgcagaagcagaattcat 35927042  T

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Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 46 - 310
Target Start/End: Original strand, 26257114 - 26257378
Alignment:
46 caaaagaaatattgaagaaatttcagatggaggagtgcaaagtagttagcacaccaatgaaccaaaaggaaaagtttagcaaggaagatgatgctgataa 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
26257114 caaaagaaatattgaagaaatttcagatggaggagtgcaaagtagttagcacaccaatgaaccaaaaggaaaagtttagcaaggaagatggtgctgataa 26257213  T
146 aattgacgaaggatattataggagcttgattggatgtttaatgtatctcacagcaacaaggccagatattctatttgctataagtcttctctctcggttt 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
26257214 aattgacgaaggatattataggagcttgattggatgtttaatgtatctcacagcaacaaggccagatattctatttgctgtaagtcttctctctcggttt 26257313  T
246 atgcattgtgctagtgaaatgcatttgatagcagcaaaaagaatactaaggtatattaaaggtac 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
26257314 atgcattgtgctagtgaaatgcatttgatagcagcaaaaagaatactgaggtatattaaaggtac 26257378  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 310 - 370
Target Start/End: Original strand, 26257523 - 26257583
Alignment:
310 cacaaagaagcaagagattgtagcacaatccactgcagaagctgaattcatagcagcaaca 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26257523 cacaaagaagcaagagattgtagcacaatccactgcagaagctgaattcatagcagcaaca 26257583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 310
Target Start/End: Original strand, 43444628 - 43444928
Alignment:
10 atgaaaatgaggtgtttatttgccnnnnnnnntatacaaaagaaatattgaagaaatttcagatggaggagtgcaaagtagttagcacaccaatgaacca 109  Q
    |||||||||||||||| |||||||        ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
43444628 atgaaaatgaggtgttcatttgccaaaaaaaatatgcaaaagaaatattgaagaaatttcatatggaggagtgcaaagtagttagcacaccaatgaacca 43444727  T
110 aaaggaaaagtttagcaaggaagatgatgctgataaaattgacgaaggatattataggagcttgattggatgtttaatgtatctcacagcaacaaggcca 209  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
43444728 aaaggaaaagtttagcaaggaagatggtgttgataaaattgacgaaggatattataggagcttgattggatgtttaatgtatctcacagcaacaagacca 43444827  T
210 gatattctatttgctataagtcttctctctcggtttatgcattgtgctagtgaaatgcatttgatagcagcaaaaagaatactaaggtatattaaaggta 309  Q
    ||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
43444828 gatattctatttgatgtaagtcttctctctcgatttatgcattgtgctagtgaaatgcatttgatagcagcaaaaagaatactgaggtatattaaaggta 43444927  T
310 c 310  Q
    |    
43444928 c 43444928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 46 - 290
Target Start/End: Original strand, 18014300 - 18014544
Alignment:
46 caaaagaaatattgaagaaatttcagatggaggagtgcaaagtagttagcacaccaatgaaccaaaaggaaaagtttagcaaggaagatgatgctgataa 145  Q
    |||| ||||||||||  ||||| |||||||||||||| || | | ||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||    
18014300 caaaggaaatattgagaaaattccagatggaggagtgtaaggcaattagcacaccaatgaaccaaaaggagaagttgagcaaggaagatggtgctgataa 18014399  T
146 aattgacgaaggatattataggagcttgattggatgtttaatgtatctcacagcaacaaggccagatattctatttgctataagtcttctctctcggttt 245  Q
    | ||||||||||||| || |||||  ||||||||||||||||||||||||| |||||||| || || ||| |||||| | ||||||| ||||| || |||    
18014400 agttgacgaaggatactacaggagtatgattggatgtttaatgtatctcactgcaacaagaccggacattttatttgttgtaagtctcctctcccgcttt 18014499  T
246 atgcattgtgctagtgaaatgcatttgatagcagcaaaaagaata 290  Q
    |||||||||||||||||||  |||||  ||||||||| |||||||    
18014500 atgcattgtgctagtgaaacacatttagtagcagcaagaagaata 18014544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 310 - 370
Target Start/End: Original strand, 43445073 - 43445133
Alignment:
310 cacaaagaagcaagagattgtagcacaatccactgcagaagctgaattcatagcagcaaca 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43445073 cacaaagaagcaagagattgtagcacaatccactgcagaagctgaattcatagcagcaaca 43445133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 370
Target Start/End: Original strand, 18014709 - 18014769
Alignment:
310 cacaaagaagcaagagattgtagcacaatccactgcagaagctgaattcatagcagcaaca 370  Q
    |||||||||||| || |  |||||||| ||||||||||||||||| |||||||||||||||    
18014709 cacaaagaagcaggaaacagtagcacagtccactgcagaagctgagttcatagcagcaaca 18014769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 26767364 - 26767412
Alignment:
312 caaagaagcaagagattgtagcacaatccactgcagaagctgaattcat 360  Q
    ||||||| ||||| ||||||||||| || ||||||||||| ||||||||    
26767364 caaagaaacaagatattgtagcacagtcaactgcagaagcagaattcat 26767412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 50 - 311
Target Start/End: Original strand, 16942101 - 16942363
Alignment:
50 agaaatattgaagaaatttcagatggaggagtgcaaagtagttagcacaccaatgaaccaaaaggaaaagtttagcaaggaagatgatgctgataaaa-t 148  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||||||||| |    
16942101 agaaatattgaagaaattcaagatggaggagtgcaaagtagttaggacaccaatgaaccaaaaagaaaagttgagcaaggaagatggtgctgataaaaat 16942200  T
149 tgacgaaggatattataggagcttgattggatgtttaatgtatctcacagcaacaaggccagatattctatttgctataagtcttctctctcggtttatg 248  Q
    ||| |||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||| |||||||||| | ||||| | |||||||||||||||    
16942201 tgatgaaggatattatagaagcttgattggatgtttaatgtatctcacgtcaacaaggccagacattctatttgttgtaagtttactctctcggtttatg 16942300  T
249 cattgtgctagtgaaatgcatttgatagcagcaaaaagaatactaaggtatattaaaggtaca 311  Q
    |||||| |||||||||||||||| ||||||||||||||| || ||||||||||||||||||||    
16942301 cattgttctagtgaaatgcatttaatagcagcaaaaagagtattaaggtatattaaaggtaca 16942363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 370
Target Start/End: Original strand, 16942507 - 16942567
Alignment:
310 cacaaagaagcaagagattgtagcacaatccactgcagaagctgaattcatagcagcaaca 370  Q
    ||||||||||||||| ||||| |||||||||| ||| |||||||| ||||||| |||||||    
16942507 cacaaagaagcaagatattgttgcacaatccaatgctgaagctgagttcatagtagcaaca 16942567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 24012770 - 24012681
Alignment:
46 caaaagaaatattgaagaaatttcagatggaggagtgcaaagtagttagcacaccaatgaaccaaaaggaaaagtttagcaaggaagatg 135  Q
    |||| ||||||||||  |||||| ||||||| ||||| |||||||||||||||||||| ||||||||||| || || || ||||||||||    
24012770 caaaggaaatattgacaaaattttagatggaagagtgtaaagtagttagcacaccaataaaccaaaaggagaatttgagtaaggaagatg 24012681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 9791841 - 9791793
Alignment:
312 caaagaagcaagagattgtagcacaatccactgcagaagctgaattcat 360  Q
    ||||||| ||||| ||||||||||| || ||||||||||| ||||||||    
9791841 caaagaaacaagatattgtagcacagtcaactgcagaagcagaattcat 9791793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 45995302 - 45995254
Alignment:
312 caaagaagcaagagattgtagcacaatccactgcagaagctgaattcat 360  Q
    ||||||| ||||| ||||||||||| || ||||||||||| ||||||||    
45995302 caaagaaacaagatattgtagcacagtcaactgcagaagcggaattcat 45995254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 26709168 - 26709120
Alignment:
312 caaagaagcaagagattgtagcacaatccactgcagaagctgaattcat 360  Q
    ||||||| ||||| ||||||||||| || ||||||||||| ||||||||    
26709168 caaagaaacaagatattgtagcacagtcaactgcagaagcagaattcat 26709120  T

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