View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_39 (Length: 348)
Name: NF1590_high_39
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_39 |
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| [»] scaffold0254 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 321
Target Start/End: Original strand, 2140595 - 2140908
Alignment:
| Q |
11 |
gatgaaattaatgattattggaaaaacaaatttagacatgattattaactgatactt-gtataattattttgtgggcagactgcattccactatgtattt |
109 |
Q |
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| T |
2140595 |
gatgaaattaatgattattggaaaaacaaatttagacatgattattaactgatactttgtataattattttgtgggcagattgcattccactatgtattt |
2140694 |
T |
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| Q |
110 |
ataggtgcaaactacatttgaggaagatggtatgtataacagcatgcatgacatgttgtgatcgctgcaaatgtgtccctcttgatcaaacttatggtaa |
209 |
Q |
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| T |
2140695 |
ataggtgcaaactacatttgaggaagatggtatgtataacagcatgcatgacatgttgtgatcgctgcaaatgtgtccctcttgatcaaacttatggtaa |
2140794 |
T |
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| Q |
210 |
cagggataaatgtggcaaatgctatactgatatgctaactcaccatgacaaagtcaagtgtccatagat--acacagagttatatatctagtagttccta |
307 |
Q |
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| T |
2140795 |
cagggataaatgtggcaaatgctatactgatatgctaactcaccatgacaaagtcaagtgtccatagatacacacagagttatatatcaagtagttccta |
2140894 |
T |
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| Q |
308 |
taagtttaattgtg |
321 |
Q |
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| T |
2140895 |
taagtttaattgtg |
2140908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 65 - 293
Target Start/End: Original strand, 2146892 - 2147117
Alignment:
| Q |
65 |
cttgtataattattttgtgggcagactgcattccactatgtatttataggtgcaaactacatttgaggaagatggtatgtataacagcatgcatgacatg |
164 |
Q |
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| T |
2146892 |
cttgtgtatttattttgtgggcagattgcattccactatgttatgttaggtgcaaattacatttaaggaaggtagaatgcatgacacaatgcatgacatg |
2146991 |
T |
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| Q |
165 |
ttgtgatcgctgcaaatgtgtccctcttgatcaaacttatggtaacagggataaatgtggcaaatgctatactgatatgctaactcaccatgacaaagtc |
264 |
Q |
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| T |
2146992 |
ttgtgatcgctgtcaatgtgtccctcctg---gaacttatggtaacagagaaaaatgtggcaagtgctacactgatatgcgaactttcctcgacgaaatc |
2147088 |
T |
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| Q |
265 |
aagtgtccatagatacacagagttatata |
293 |
Q |
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| T |
2147089 |
atgtgcccatagatacacacacttatata |
2147117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 243
Target Start/End: Original strand, 2125689 - 2125855
Alignment:
| Q |
74 |
ttattttgtgggcagactgcattccactatgtatttataggtgcaaactacatttgaggaagatggtatgtataacagcatgcatgacatgttgtgatcg |
173 |
Q |
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| T |
2125689 |
ttattttgtgggcagattgcattccactatgtggttataggtgccaaaaacattctaggcaaaacacatgcataagagcatgcatgacttgttgtgaccg |
2125788 |
T |
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| Q |
174 |
ctgcaaatgtgtccctcttgatcaaacttatggtaacagggataaatgtggcaaatgctatactgatatg |
243 |
Q |
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| T |
2125789 |
gtgcaaatgtgttcctccag---gaacttatggtaatagagaaaaatgtggcaagtgttacactgatatg |
2125855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0254 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 65 - 293
Target Start/End: Original strand, 23353 - 23581
Alignment:
| Q |
65 |
cttgtataattattttgtgggcagactgcattccactatgtatttataggtgcaaactacatttgaggaagatggtatgtataacagcatgcatgacatg |
164 |
Q |
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| T |
23353 |
cttgtgtatttattttgtgggcagattgcattccactatgtggttataggtgcaaactacatttgaggaagatggtatgtataacagcatgcatgacatg |
23452 |
T |
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| Q |
165 |
ttgtgatcgctgcaaatgtgtccctcttgatcaaacttatggtaacagggataaatgtggcaaatgctatactgatatgctaactcaccatgacaaagtc |
264 |
Q |
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| T |
23453 |
ttgtgatcgctgcaaatgtgtccctcttgatcaaacttatggtaacagagaaaaatgtggcaagtgctacactgatatgcgaactttcctcgacgaaatc |
23552 |
T |
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| Q |
265 |
aagtgtccatagatacacagagttatata |
293 |
Q |
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| T |
23553 |
atgtgcccatagatacacacacttatata |
23581 |
T |
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