View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_4 (Length: 582)
Name: NF1590_high_4
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 3 - 275
Target Start/End: Original strand, 25901835 - 25902107
Alignment:
| Q |
3 |
tcatgacatgacaatatgagctaagttctatgagactggtttaagatctatggatcaacaacatgatacaaactgtataaatcaagatcattgatgctat |
102 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901835 |
tcatgacatgacaatatgagctaggttctatgagactggtttaagatctatggatcaacaacatgatacaaactgtataaatcaagatcattgatgctat |
25901934 |
T |
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| Q |
103 |
aaaaaattccatttatcttccgcattgttctttagctatattgactctattcattttgagtactctactgtatttttctgtcatcatttatttnnnnnnn |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901935 |
aaaaaattccatttatcttccgcattgttctttagctatattgactctattcattttgagtactctactgtatttttctgtcatcatttatttaaaaaaa |
25902034 |
T |
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| Q |
203 |
tgtcaccaagaaatgtttaaatttctttcaacttctcaacttatatgtgggagctataaaattagaaccaact |
275 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25902035 |
tgtcacaaagaaatgtttaaatttctttcaacttctcaacttatatgtgggagctataaaattagaaccaact |
25902107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 327 - 569
Target Start/End: Original strand, 25902113 - 25902354
Alignment:
| Q |
327 |
gaaagcttaagttggtttcttcttctgtgtcgatgtccttataattagctaactacatctaatactaaactctttggatatcagattaaaattgctggta |
426 |
Q |
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| T |
25902113 |
gaaagcttaagttggtttcttcttgtgtgtcgatgtccttataattagctaacta-atctaatactaaactttttggatatcagattaaaattgctggta |
25902211 |
T |
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| Q |
427 |
tttttcacatatcttttaaagatatgtgaaaaaccttagattttaacatagtttgaagcaaagattaatcttatatcggatgaatcaaaactcaaaaaga |
526 |
Q |
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| T |
25902212 |
tttttcacatatcttttaaagatatgtgaaaaaccttagattttaacatagtttgaagcaaagattaatcttatatcggatgaatcaaaactcaaaaaga |
25902311 |
T |
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| Q |
527 |
gttcaaaactctatttgattatttatttgttgaactaatttgt |
569 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25902312 |
gttcgaaactctatttgattatttatttgttgaactaatttgt |
25902354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 1511579 - 1511655
Alignment:
| Q |
3 |
tcatgacatgacaatatgagctaagttctatgagactggtttaagatctatggatcaacaacatgatacaaactgta |
79 |
Q |
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|||||||||| || ||||||||| ||||||||||| |||| ||||||| |||||| ||| |||||| |||| |||| |
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| T |
1511579 |
tcatgacatggcagtatgagctaggttctatgagattggtgcaagatctctggatctacaccatgatgcaaattgta |
1511655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 459
Target Start/End: Complemental strand, 25902244 - 25902212
Alignment:
| Q |
427 |
tttttcacatatcttttaaagatatgtgaaaaa |
459 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
25902244 |
tttttcacatatctttaaaagatatgtgaaaaa |
25902212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 7e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 3 - 189
Target Start/End: Complemental strand, 2437652 - 2437466
Alignment:
| Q |
3 |
tcatgacatgacaatatgagctaagttctatgagactggtttaagatctatggatcaacaacatgatacaaactgtataaatcaagatcattgatgctat |
102 |
Q |
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||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| |||||||| |
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| T |
2437652 |
tcatggcatgatagtatgagctaggttctatgagactggtttaagatctatggatctacaacatgatacaaactgtataactcaagctcagagatgctat |
2437553 |
T |
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| Q |
103 |
aaaaaattccatttatcttccgcattgttctttagctatattgactctattcattttgagtactctactgtatttttctgtcatcat |
189 |
Q |
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| T |
2437552 |
acaaattttcatttatattcctcattgttctttagctatattgactgtattcattttgagtactccactgtatttttctgtcatcat |
2437466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 332 - 430
Target Start/End: Complemental strand, 25824774 - 25824676
Alignment:
| Q |
332 |
cttaagttggtttcttcttctgtgtcgatgtccttataattagctaactacatctaatactaaactctttggatatcagattaaaattgctggtatttt |
430 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25824774 |
cttaagttggtttcttcttgcgtgtcgatatccttataattagctaactacatctaatactaaactctttggatatcagattaaaattgctggtatttt |
25824676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 337 - 430
Target Start/End: Complemental strand, 32442896 - 32442803
Alignment:
| Q |
337 |
gttggtttcttcttctgtgtcgatgtccttataattagctaactacatctaatactaaactctttggatatcagattaaaattgctggtatttt |
430 |
Q |
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|||||||||||||| ||| | ||| ||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |
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| T |
32442896 |
gttggtttcttcttgtgtattgatatccttataactagctgactacatctaatactaaactctttagatatcagattaaaatggctggcatttt |
32442803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 27537642 - 27537485
Alignment:
| Q |
3 |
tcatgacatgacaatatgagctaagttctatgagactggtttaagatctatggatcaacaacatgatacaaactgtataaatcaagatcattgatgctat |
102 |
Q |
| |
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||||| ||||||| |||||| || ||||||||||| |||| ||||||| |||||| |||||||||| |||| |||||| ||||| ||| |||||||| |
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| T |
27537642 |
tcatggcatgacagtatgagataggttctatgagattggtgcaagatctctggatctacaacatgatgcaaattgtatatctcaaggtcacagatgctat |
27537543 |
T |
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| Q |
103 |
aaaaaattccatttatcttccgcattgttctttagctata-ttgactctattcatttt |
159 |
Q |
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| ||| || ||||| | |||| |||||||||||||||||| |||||| |||||||||| |
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|
| T |
27537542 |
acaaattttcatttgtattcctcattgttctttagctatatttgactgtattcatttt |
27537485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 275 - 329
Target Start/End: Original strand, 10821972 - 10822026
Alignment:
| Q |
275 |
ttatatatgattcttatacttaaccaactgctcacatgaaagctaacaattagaa |
329 |
Q |
| |
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|||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
10821972 |
ttatatatgattgttatatttaaccaactgctcacatgaaagcaaacaattagaa |
10822026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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