View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1590_high_40 (Length: 344)
Name: NF1590_high_40
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_40 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 47074530 - 47074203
Alignment:
| Q |
1 |
tagctatttttctattgactaaggtgaataatagtactaatttcatatctgtagtttgttaagtgcttcgctatgtgtccagcttcaaatggaaatcctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47074530 |
tagctatttttctattgactaaggtgaataatagtactaatttcatatctgtagtttgttaagtgcttcactatgtgtccagcttcaaatggaaatcctc |
47074431 |
T |
|
| Q |
101 |
aacagccagattctttgcattacatggatttatctggtcggttaaattcatatcaaaaggtaagcttgatatgatacttgtcaatggaagattccaacnn |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47074430 |
aacagccagattctttgcattacatggatttatctggtcggttaaattcatatcaaaaggtaagcttaatatgatacttgtcaatggaagattccaactt |
47074331 |
T |
|
| Q |
201 |
nnnnnatcatcaacttgtgaaacataatgaaatcaatcgctaatgaacaccctacaattttttaacttcttttttggttctgagtaacttggtgtgatat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47074330 |
ttttaatcatcaacttgtgaaacataatgaaatcaatcgctaatgaacaccctacaattttttaacttcttttttggttctgagtaacttggtgtgatat |
47074231 |
T |
|
| Q |
301 |
tatcactatcttgcctaatgaacaccct |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
47074230 |
tatcactatcttgcctaatgaacaccct |
47074203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 32 - 171
Target Start/End: Complemental strand, 47056526 - 47056387
Alignment:
| Q |
32 |
tagtactaatttcatatctgtagtttgttaagtgcttcgctatgtgtccagcttcaaatggaaatcctcaacagccagattctttgcattacatggattt |
131 |
Q |
| |
|
||||||||||||||| | |||||||||| || ||||| | | | | |||||||||||||| |||||||| || ||||||||||||||||||| ||| |
|
|
| T |
47056526 |
tagtactaatttcatctttgtagtttgtgaaaagcttcaatgttttttcagcttcaaatggagatcctcaaaagtcagattctttgcattacatcgatga |
47056427 |
T |
|
| Q |
132 |
atctggtcggttaaattcatatcaaaaggtaagcttgata |
171 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
47056426 |
atctggtcggttaaattcataccaaaaggtaagattgata |
47056387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 18230881 - 18231046
Alignment:
| Q |
10 |
ttctattgactaaggtgaataatagtactaatttcatatctgtagtttgttaagtgcttcgctatgt----gtccagcttcaaatggaaatcctcaacag |
105 |
Q |
| |
|
||||||| | |||||| |||||||||||||||||||||| ||||||||||||| ||||| ||| | ||||||||||||| |||| |||||||||| |
|
|
| T |
18230881 |
ttctattaattaaggtcaataatagtactaatttcatatttgtagtttgttaatagcttcaatatatatatgtccagcttcaaacggaagtcctcaacag |
18230980 |
T |
|
| Q |
106 |
ccagattctttgcattacatggatttatctggtcggttaaattcatatcaaaaggtaagcttgata |
171 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18230981 |
ccagattctttgcattacatcgatttatccggtcggttaaattcataccaaaaggtaagcttgata |
18231046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University