View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_high_41 (Length: 344)

Name: NF1590_high_41
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_high_41
NF1590_high_41
[»] chr7 (2 HSPs)
chr7 (13-333)||(48100910-48101230)
chr7 (216-271)||(33611265-33611320)
[»] chr3 (2 HSPs)
chr3 (216-333)||(49499263-49499380)
chr3 (118-213)||(49499142-49499237)
[»] chr1 (3 HSPs)
chr1 (216-333)||(4614743-4614860)
chr1 (173-218)||(4614677-4614722)
chr1 (226-325)||(24065076-24065175)
[»] chr5 (4 HSPs)
chr5 (226-333)||(23622383-23622490)
chr5 (112-213)||(29955757-29955858)
chr5 (115-213)||(23622249-23622347)
chr5 (220-271)||(19237523-19237574)
[»] chr4 (2 HSPs)
chr4 (228-333)||(37061219-37061324)
chr4 (228-325)||(13685873-13685970)
[»] chr2 (2 HSPs)
chr2 (216-333)||(33650723-33650840)
chr2 (120-213)||(33650606-33650697)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 48101230 - 48100910
Alignment:
Q  13 ttttggacatgtggttgatggaattcaaaaaaggaattagtgttgaaaaattgacaaataccctctacgnnnnnnnaagtgttcgggattgacaaattcc 112  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       ||||||| ||||||||||||||||    
T  48101230 ttttggacatgtggttgatggaattcaaaaaaggaagtagtgttgaaaaattgacaaataccctctacgtttttttaagtgtttgggattgacaaattcc 48101131  T
Q  113 caaactggaattggcatttgtatttgggattctgatggtacgtttgtcttggcaaagatcgtcagttttccatgtatttattcggttgatgttggtgaag 212  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48101130 cgaactggaattggcatttgtattcgggattctgatggtacgtttgtcttggcaaaggtcgtcagttttccatgtatttattcggttgatgttggtgaag 48101031  T
Q  213 ctttggttaagtaatatgcaatttgacaatgttgattttgaaaccgattccaagattacccatgacgcttttcattctactcaagaagacatttctgaat 312  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48101030 ctttggttaagtgatatgcaatttgacaatgttgattttgaaaccgattccaagattacccatgacgcttttcattctactcaagaagacatttctgaat 48100931  T
Q  313 ttgggtgcgttatttcttctt 333  Q
    |||| ||||||||||||||||    
T  48100930 ttggatgcgttatttcttctt 48100910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 33611320 - 33611265
Alignment:
Q  216 tggttaagtaatatgcaatttgacaatgttgattttgaaaccgattccaagattac 271  Q
    ||||| ||| ||||||||||||||||||| ||||||||||| ||||| ||| ||||    
T  33611320 tggttgagtgatatgcaatttgacaatgtcgattttgaaacagattctaagcttac 33611265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 216 - 333
Target Start/End: Original strand, 49499263 - 49499380
Alignment:
Q  216 tggttaagtaatatgcaatttgacaatgttgattttgaaaccgattccaagattacccatgacgcttttcattctactcaagaagacatttctgaatttg 315  Q
    ||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |    
T  49499263 tggttaagtgatttgcaatttgacgatgttgattttgaaatcgattccaagattactcgtgacgcttttcattctactcaagaagacatttcagaattcg 49499362  T
Q  316 ggtgcgttatttcttctt 333  Q
    ||||| ||||||||||||    
T  49499363 ggtgcattatttcttctt 49499380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 118 - 213
Target Start/End: Original strand, 49499142 - 49499237
Alignment:
Q  118 tggaattggcatttgtatttgggattctgatggtacgtttgtcttggcaaagatcgtcagttttccatgtatttattcggttgatgttggtgaagc 213  Q
    |||||||| ||||||| || |||||||||| ||||| ||||||||||||||    |||||||||||||||||||| |||||||||||||| |||||    
T  49499142 tggaattgacatttgtgttcgggattctgacggtacatttgtcttggcaaaagctgtcagttttccatgtatttactcggttgatgttggcgaagc 49499237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 216 - 333
Target Start/End: Original strand, 4614743 - 4614860
Alignment:
Q  216 tggttaagtaatatgcaatttgacaatgttgattttgaaaccgattccaagattacccatgacgcttttcattctactcaagaagacatttctgaatttg 315  Q
    ||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| ||||||||| |||||||||||    
T  4614743 tggttaattgatatgcaatttgacaatgttgattttgaaaccgatttcaagattacccgttacgcttttcattctactaaagaagacaattctgaatttg 4614842  T
Q  316 ggtgcgttatttcttctt 333  Q
     |||| ||||||||||||    
T  4614843 agtgcattatttcttctt 4614860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 4614677 - 4614722
Alignment:
Q  173 gtcagttttccatgtatttattcggttgatgttggtgaagctttgg 218  Q
    |||||||||||||||||||||| ||||||||||| |||||| ||||    
T  4614677 gtcagttttccatgtatttatttggttgatgttgctgaagcattgg 4614722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 325
Target Start/End: Original strand, 24065076 - 24065175
Alignment:
Q  226 atatgcaatttgacaatgttgattttgaaaccgattccaagattacccatgacgcttttcattctactcaagaagacatttctgaatttgggtgcgttat 325  Q
    |||||||||||||||| || ||||||||||| ||| ||||| ||||   ||| || || ||| ||| || ||| |||| |||||||||||||||| ||||    
T  24065076 atatgcaatttgacaacgtcgattttgaaacggataccaagtttacttgtgatgccttccatgctaatcgagatgacacttctgaatttgggtgcattat 24065175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 226 - 333
Target Start/End: Original strand, 23622383 - 23622490
Alignment:
Q  226 atatgcaatttgacaatgttgattttgaaaccgattccaagattacccatgacgcttttcattctactcaagaagacatttctgaatttgggtgcgttat 325  Q
    ||||||||||||||||||||||||||||||||||  |||||||||| | ||| |||||||||||||||| ||| ||||||||||||||||||||| ||||    
T  23622383 atatgcaatttgacaatgttgattttgaaaccgacaccaagattactcttgatgcttttcattctactcgagacgacatttctgaatttgggtgcattat 23622482  T
Q  326 ttcttctt 333  Q
    ||||||||    
T  23622483 ttcttctt 23622490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 29955858 - 29955757
Alignment:
Q  112 ccaaactggaattggcatttgtatttgggattctgatggtacgtttgtcttggcaaagatcgtcagttttccatgtatttattcggttgatgttggtgaa 211  Q
    ||||||| |||||| ||||||| || |||||| ||| ||| ||||||||||||||||  | | |||||||||||||||||| ||||||||||||||||||    
T  29955858 ccaaactagaattgacatttgtgttcgggattttgaaggtgcgtttgtcttggcaaaagttgccagttttccatgtatttactcggttgatgttggtgaa 29955759  T
Q  212 gc 213  Q
    ||    
T  29955758 gc 29955757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 23622249 - 23622347
Alignment:
Q  115 aactggaattggcatttgtatttgggattctgatggtacgtttgtcttggcaaagatcgtcagttttccatgtatttattcggttgatgttggtgaagc 213  Q
    ||||||||||||||||||| ||   || ||||| |||| |||||||||||| ||  | |||||||||||||||||||| |||||||| |||||||||||    
T  23622249 aactggaattggcatttgtgttcatgactctgaaggtaagtttgtcttggccaaagttgtcagttttccatgtatttactcggttgacgttggtgaagc 23622347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 19237523 - 19237574
Alignment:
Q  220 taagtaatatgcaatttgacaatgttgattttgaaaccgattccaagattac 271  Q
    ||||| |||||||||||||||| |||||||||||||| ||||||||| ||||    
T  19237523 taagtgatatgcaatttgacaacgttgattttgaaacggattccaagcttac 19237574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 333
Target Start/End: Complemental strand, 37061324 - 37061219
Alignment:
Q  228 atgcaatttgacaatgttgattttgaaaccgattccaagattacccatgacgcttttcattctactcaagaagacatttctgaatttgggtgcgttattt 327  Q
    ||||||||| ||||||||||||| |||||||| | ||||||||| | | || ||||| ||||||||||||| || |||||||||||||||||| ||||||    
T  37061324 atgcaatttaacaatgttgatttcgaaaccgactacaagattactcgtaacactttttattctactcaagacgatatttctgaatttgggtgcattattt 37061225  T
Q  328 cttctt 333  Q
    ||||||    
T  37061224 cttctt 37061219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 325
Target Start/End: Original strand, 13685873 - 13685970
Alignment:
Q  228 atgcaatttgacaatgttgattttgaaaccgattccaagattacccatgacgcttttcattctactcaagaagacatttctgaatttgggtgcgttat 325  Q
    |||||||||||||| || | ||||||||| ||||||||| ||||   ||| || || ||| ||| |||||  |||| |||||||||||||||| ||||    
T  13685873 atgcaatttgacaacgtcggttttgaaacggattccaagcttacttgtgatgcattccatgctaatcaaggcgacacttctgaatttgggtgcattat 13685970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 216 - 333
Target Start/End: Original strand, 33650723 - 33650840
Alignment:
Q  216 tggttaagtaatatgcaatttgacaatgttgattttgaaaccgattccaagattacccatgacgcttttcattctactcaagaagacatttctgaatttg 315  Q
    ||||| ||| |||||||||||||||||||||||||||||| ||||| |||||||||   | || |||||| |||||||| |||  |||||||||||||||    
T  33650723 tggttgagtgatatgcaatttgacaatgttgattttgaaatcgatttcaagattacttgtaacacttttctttctactcgagactacatttctgaatttg 33650822  T
Q  316 ggtgcgttatttcttctt 333  Q
     |||| ||||||||||||    
T  33650823 agtgcattatttcttctt 33650840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 33650606 - 33650697
Alignment:
Q  120 gaattggcatttgtatttgggattctgatggtacgtttgtcttggcaaagatcgtcagttttccatgtatttattcggttgatgttggtgaagc 213  Q
    |||||||||||||| ||  ||||| ||| |||  |||||||||||||||  | ||||||||||||||||||||  |||||  ||||||||||||    
T  33650606 gaattggcatttgtgttcaggattgtgaaggt--gtttgtcttggcaaaagttgtcagttttccatgtatttacccggtttgtgttggtgaagc 33650697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University