View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_5 (Length: 573)
Name: NF1590_high_5
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 465 - 562
Target Start/End: Complemental strand, 15084667 - 15084570
Alignment:
| Q |
465 |
ggggacccttgttgacttcacaagtctatgcaaaacattttactaccatatatacctactaatccttattgttaatccttgatactaccacatttcat |
562 |
Q |
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| T |
15084667 |
ggggacccttgttgacttcacaagtcaaggcaaaacattttactaccatatatacctaccaatccttattgttaatccttgatactaccacatttcat |
15084570 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 14663538 - 14663599
Alignment:
| Q |
19 |
tgcagaaattggcattcatgtaactcttgagaatgtgtctagttcaatatgattgatttaaa |
80 |
Q |
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| T |
14663538 |
tgcagaaattggcattcatgtaactcttgaaaatgtgtctattttaatatgatcgttttaaa |
14663599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 18656864 - 18656805
Alignment:
| Q |
271 |
caattcaactggttatgacttactgcagttaagatatttattttctcacctaatattttt |
330 |
Q |
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| T |
18656864 |
caattcaactggttatgacctacagtagtgaagatttttattttctcacctaacattttt |
18656805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 18689346 - 18689287
Alignment:
| Q |
271 |
caattcaactggttatgacttactgcagttaagatatttattttctcacctaatattttt |
330 |
Q |
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| T |
18689346 |
caattcaactggttatgacctacagtggtgaagatttttattttctcacctaacattttt |
18689287 |
T |
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