View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_63 (Length: 289)
Name: NF1590_high_63
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_63 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 37265696 - 37265530
Alignment:
| Q |
18 |
acgagaaagtcaacgcaaacacacagtctatatggtacgtaaatgtcttgttgtttccttcgcttttcatttgtttaaaaccctcaagttcacattgacc |
117 |
Q |
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| T |
37265696 |
acgagaaagtcaacgcaaacacacagtctatatggtacgtaaatgtcttgttgtttccttcgcttttcatttgtttaaaaccctcaagttcacattgacc |
37265597 |
T |
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| Q |
118 |
nnnnnnnnnnnnnccttccaagttcacataatctattnnnnnnnttcacaaattgaattgattaagatt |
186 |
Q |
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| T |
37265596 |
--aaaaaaaaaaaccttccaagttcacataatctattaaaaaaattcacaaattgaattgattaagatt |
37265530 |
T |
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Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 37265514 - 37265443
Alignment:
| Q |
173 |
aattgattaagattaaattgctttaaatattactacttcacttaaaaattaccaattaaaatatcagatctt |
244 |
Q |
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| T |
37265514 |
aattgattaagattaaattgctttaaatattactacttcacttaaaaattaccaattaaaatatcagatctt |
37265443 |
T |
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