View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_65 (Length: 283)
Name: NF1590_high_65
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_65 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 51898874 - 51899142
Alignment:
| Q |
18 |
cattgaagaagcactcaatcgccatatcagtttctgtaaagagttcagatcatcatcatccactgttttgaataaaacagaacaccctataattctcatg |
117 |
Q |
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| T |
51898874 |
cattgaagaagcactcaatcgccatatcagtttctgtaaagagttcagatcatcatcatccactgttttgaataaaacagaacaccctatcattctcatg |
51898973 |
T |
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| Q |
118 |
agtcgaagaattcgtcggagtttggattgccctagaccgcctcttcgatcaaactcaaccggagttcttcctgctgttgatggtgttcgttcttcttct- |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51898974 |
agtcgaagaattcgtcggagtttggattgccctagaccgcctcttcgatcaaactcaaccggagttcttcctgctgttgatggtgttcgttcttcttctt |
51899073 |
T |
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| Q |
217 |
--tcgttgattcgatcagatagttgcttctcatcaatatctggttaagttctttagtttagactctttt |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51899074 |
cgtcgttgattcgatcagatagttgcttctcatcaatatctggttaagttctttagtttagactctttt |
51899142 |
T |
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