View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_high_89 (Length: 249)
Name: NF1590_high_89
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_high_89 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 47681556 - 47681467
Alignment:
| Q |
160 |
aactgtgcacaagttaatgttgagatgccaaggccaagcagggttgtaaatgataatctttttctcaaacccataaattgcatcccctcc |
249 |
Q |
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| T |
47681556 |
aactgtgcacaagttaatgttgagatgccaaggccaagcagggttgtaaatgataatctttttctcaaacccataaattgcatcccctcc |
47681467 |
T |
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Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 47681703 - 47681630
Alignment:
| Q |
13 |
atactctaaatgacacttgttagtaatttcttttttaagctagaccaaaagaaaaaggcaaaagtattcaaggg |
86 |
Q |
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| T |
47681703 |
atactctaaatgacacttgttagtaatttcttttttaagctagaccaaaagaaaaaggcaaaagtattcaaggg |
47681630 |
T |
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