View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_low_1 (Length: 792)

Name: NF1590_low_1
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_low_1
NF1590_low_1
[»] chr7 (3 HSPs)
chr7 (17-665)||(48482619-48483266)
chr7 (679-763)||(21471404-21471488)
chr7 (694-776)||(1074063-1074145)
[»] chr8 (2 HSPs)
chr8 (678-763)||(16052700-16052785)
chr8 (333-421)||(10037573-10037661)
[»] chr2 (1 HSPs)
chr2 (711-776)||(22389207-22389272)
[»] chr5 (1 HSPs)
chr5 (681-763)||(22754563-22754645)
[»] chr3 (1 HSPs)
chr3 (685-763)||(11520747-11520825)
[»] chr1 (2 HSPs)
chr1 (694-763)||(23223145-23223214)
chr1 (711-740)||(14397286-14397315)
[»] chr6 (2 HSPs)
chr6 (685-776)||(12972813-12972904)
chr6 (713-763)||(15574550-15574600)
[»] scaffold1026 (1 HSPs)
scaffold1026 (711-753)||(2284-2326)


Alignment Details
Target: chr7 (Bit Score: 569; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 17 - 665
Target Start/End: Complemental strand, 48483266 - 48482619
Alignment:
Q  17 cataggggctaaggttttcttgacagtttgttgtcaggtgattttagctactagcctgcaatattcttgtagcagtagctaggaactaatttgcatgctt 116  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48483266 cataggggctaaggttttcttgacagtt-gttgtcaggtgattttagctactagcctgcaatattcttgtagcagtagctaggaactaatttgcatgctt 48483168  T
Q  117 gttttgataactaaatgaattctgtcagggggtataaaaaatgacaattatacaatataannnnnnnnnnnnngtcattccattccccaacgttatttca 216  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||             |||||||||||||||||||||||||||    
T  48483167 gttttgataactaaatgaattctgtcggggggtataaaaaatgacaatcatacaatataatttttttatttttgtcattccattccccaacgttatttca 48483068  T
Q  217 ttacccaatatgacttatacaaaacactttttactcaagttattggggtccttttctagttgtgttacacttttactcacattcatttttcctatctttc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48483067 ttacccaatatgacttatacaaaacactttttactcaagttattggggtccttttctagttgtgttacacttttactcacattcattttttctatctttc 48482968  T
Q  317 ttgtccgcgttggtgccagacttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattttcacgtgatgtgtgca 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48482967 ttgtccgcgttggtgccagacttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattttcacgtgatgtgtgca 48482868  T
Q  417 tcaaggatgggatatagcatggcggtaagtatgatgatccttttacttaaatttaaactagtccttgatctgaagctgctactttttcttctgaatttgc 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48482867 tcaaggatgggatatagcatggcggtaagtatgatgatccttttacttaaatttaaactagtccttgatctgaagctgctactttttcttctgaatttgc 48482768  T
Q  517 tcnnnnnnnggagggcagcaaagtcatttatgtccataatcaatatatagatttttatggaagtaagcatttagttacatggctattacttccgctgctg 616  Q
    ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48482767 tctttttttggagggcagcaaagtcatttatgtccataatcaatatatagatttttatggaagtaagcatttagttacatggctattacttccgctgctg 48482668  T
Q  617 ggaaaatatgttgatattgtttaaatgtacagttgcgttctacagtgaa 665  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48482667 ggaaaatatgttgatattgtttaaatgtacagttgcgttctacagtgaa 48482619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 679 - 763
Target Start/End: Complemental strand, 21471488 - 21471404
Alignment:
Q  679 tggggttggttaagacatttcccacactgcattcgtcatgtgattgtaccttgctatgagattgaggtaattataaacagacatt 763  Q
    ||||| |||| ||| ||||| ||| ||| || ||||||||||||||||||||||||||||||||| | |||| |||| |||||||    
T  21471488 tggggctggtcaaggcatttgccatactccagtcgtcatgtgattgtaccttgctatgagattgaagcaattctaaatagacatt 21471404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 776
Target Start/End: Complemental strand, 1074145 - 1074063
Alignment:
Q  694 catttcccacactgcattcgtcatgtgattgtaccttgctatgagattgaggtaattataaacagacatttgaggtacatatt 776  Q
    ||||| ||||||| ||  |||||||||||||||||||| ||||||||||| | ||||  |||||||||||| || ||||||||    
T  1074145 cattttccacactccagacgtcatgtgattgtaccttgttatgagattgaagcaatttcaaacagacatttaagatacatatt 1074063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 678 - 763
Target Start/End: Original strand, 16052700 - 16052785
Alignment:
Q  678 gtggggttggttaagacatttcccacactgcattcgtcatgtgattgtaccttgctatgagattgaggtaattataaacagacatt 763  Q
    ||||||||||| ||| ||||| ||||||| || ||||||||||||||||||||||||||||||||| | ||||  |||||||||||    
T  16052700 gtggggttggtcaaggcatttgccacacttcaatcgtcatgtgattgtaccttgctatgagattgaagcaattcgaaacagacatt 16052785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 333 - 421
Target Start/End: Original strand, 10037573 - 10037661
Alignment:
Q  333 cagacttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattttcacgtgatgtgtgcatcaag 421  Q
    ||||| ||||| || ||||||||||| |||||||| ||||||||||||||||||||| ||||  ||||||| || ||||| ||||||||    
T  10037573 cagacctgtgtaatttgtaaacaaagccatggttcttgtacaagttgttgcaagtgttctactcattttcatgtaatgtgcgcatcaag 10037661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 711 - 776
Target Start/End: Original strand, 22389207 - 22389272
Alignment:
Q  711 tcgtcatgtgattgtaccttgctatgagattgaggtaattataaacagacatttgaggtacatatt 776  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||||| |||||  |||||||||||    
T  22389207 tcgtcatgtgactgtaccttgctatgaaattgaagtaattataaacaaacattcaaggtacatatt 22389272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 681 - 763
Target Start/End: Complemental strand, 22754645 - 22754563
Alignment:
Q  681 gggttggttaagacatttcccacactgcattcgtcatgtgattgtaccttgctatgagattgaggtaattataaacagacatt 763  Q
    |||||||| ||  ||||| ||||||| || ||||||||||||||||||||||||| ||||||| | |||| ||||||| ||||    
T  22754645 gggttggtcaaagcatttgccacactccagtcgtcatgtgattgtaccttgctataagattgaagaaattctaaacaggcatt 22754563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 685 - 763
Target Start/End: Complemental strand, 11520825 - 11520747
Alignment:
Q  685 tggttaagacatttcccacactgcattcgtcatgtgattgtaccttgctatgagattgaggtaattataaacagacatt 763  Q
    |||| ||| ||||| |||||||  | ||||||| ||||||||||||||||||||||||| | |||||||| ||||||||    
T  11520825 tggtcaaggcatttgccacactctagtcgtcatatgattgtaccttgctatgagattgaagcaattataagcagacatt 11520747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 694 - 763
Target Start/End: Complemental strand, 23223214 - 23223145
Alignment:
Q  694 catttcccacactgcattcgtcatgtgattgtaccttgctatgagattgaggtaattataaacagacatt 763  Q
    ||||| ||||||| || ||||||||||||||||||||||||||||||| | | |||| |||| |||||||    
T  23223214 catttgccacactccaatcgtcatgtgattgtaccttgctatgagattaaagcaattctaaatagacatt 23223145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 711 - 740
Target Start/End: Complemental strand, 14397315 - 14397286
Alignment:
Q  711 tcgtcatgtgattgtaccttgctatgagat 740  Q
    ||||||||||||||||||||||||||||||    
T  14397315 tcgtcatgtgattgtaccttgctatgagat 14397286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 685 - 776
Target Start/End: Original strand, 12972813 - 12972904
Alignment:
Q  685 tggttaagacatttcccacactgcattcgtcatgtgattgtaccttgctatgagattgaggtaattataaacagacatttgaggtacatatt 776  Q
    |||| ||| ||||| ||||||| || || ||||||||||||||||||||||||||||||   |||| |||||| || ||| || ||||||||    
T  12972813 tggtcaaggcatttgccacactccaatcatcatgtgattgtaccttgctatgagattgaatcaattctaaacaaacttttaagatacatatt 12972904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 713 - 763
Target Start/End: Complemental strand, 15574600 - 15574550
Alignment:
Q  713 gtcatgtgattgtaccttgctatgagattgaggtaattataaacagacatt 763  Q
    |||||||||||||| |||||||||||||||| | ||||||| | |||||||    
T  15574600 gtcatgtgattgtatcttgctatgagattgaagcaattatacatagacatt 15574550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 711 - 753
Target Start/End: Original strand, 2284 - 2326
Alignment:
Q  711 tcgtcatgtgattgtaccttgctatgagattgaggtaattata 753  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||    
T  2284 tcgtcatgtgattgtactttgctatgaaattgaagtaattata 2326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University