View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_low_10 (Length: 528)

Name: NF1590_low_10
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_low_10
NF1590_low_10
[»] chr1 (2 HSPs)
chr1 (13-512)||(3675423-3675919)
chr1 (214-255)||(3078928-3078969)
[»] chr3 (2 HSPs)
chr3 (333-509)||(48552848-48553024)
chr3 (15-76)||(48553314-48553375)
[»] chr5 (2 HSPs)
chr5 (387-472)||(10845900-10845985)
chr5 (214-262)||(35023715-35023763)
[»] chr4 (2 HSPs)
chr4 (220-261)||(1573924-1573965)
chr4 (13-61)||(51938995-51939043)
[»] chr8 (2 HSPs)
chr8 (221-261)||(27160963-27161003)
chr8 (222-262)||(34444304-34444344)
[»] chr6 (1 HSPs)
chr6 (219-259)||(5933231-5933271)


Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 13 - 512
Target Start/End: Original strand, 3675423 - 3675919
Alignment:
Q  13 aatatccaattaacttcacaagatgtggatgacttagttgtccaagaaatataatctctgcctagaaaataaaaatatgttccaaacaacannnnnnnnn 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||             
T  3675423 aatatccaattaacttcacaagatgtggatgacttagttgtccaagaaatataatctctgcctagaaaataaaaatatgttcaaaacaacatttttttag 3675522  T
Q  113 nnnnnnnnnnnnccacaaaaattgtggtattttgtcatggaaaaaagtaatcttatagcatatgtttggttcggcaatgaaattcataaaatcccgatga 212  Q
                |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||    
T  3675523 atatatttttt-ccacaaaaattgtggtattttgtcatggaaaaaagtaatctta--gcatatgtttggttcggcaatgaaattcataaaattccgatga 3675619  T
Q  213 tccatcgtgattttgacaaaaattatactttaaagcttcaacaaaattatagtgaaaccgtaattttgctcaatcaattgccaatccaaacatacgcttc 312  Q
    |||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3675620 tccatcgtgattttgacaaaaactatactttagagctttaacaaaatcatagtgaaaccgtaattttgctcaatcaattgccaatccaaacatacgcttc 3675719  T
Q  313 gtaaactaaaagggtgcatcagaaagctaaccagccactctctatgaccttgcaagccatccaagtccaaacatttaacagctacagtttgagcctttaa 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3675720 gtaaactaaaagggtgcatcagaaagctaaccagccactctctatgaccttgcaagccatccaagtccaaacatttaacagctacagtttgagcctttaa 3675819  T
Q  413 cccttgtctaagtttatcatcaacaaaacccttataaacaggtccaaatccaccttcacctaacatattactccatgagaaattatgtgttgcttctttt 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3675820 cccttgtctaagtttatcatcaacaaaacccttataaacaggtccaaatccaccttcacctaacatattactccatgagaaattatgtgttgcttctttt 3675919  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 3078969 - 3078928
Alignment:
Q  214 ccatcgtgattttgacaaaaattatactttaaagcttcaaca 255  Q
    ||||| |||||||||||||||||| ||||| |||||||||||    
T  3078969 ccatcatgattttgacaaaaattacactttgaagcttcaaca 3078928  T

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Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 333 - 509
Target Start/End: Complemental strand, 48553024 - 48552848
Alignment:
Q  333 agaaagctaaccagccactctctatgaccttgcaagccatccaagtccaaacatttaacagctacagtttgagcctttaacccttgtctaagtttatcat 432  Q
    ||||| |||||||||||||| || ||||||||  ||||||||||||  |  | ||| ||||| | || ||||||||| || || ||||| ||||||||||    
T  48553024 agaaaactaaccagccactccctgtgaccttgtgagccatccaagttgagtcgtttgacagcaataggttgagccttcaaaccatgtctgagtttatcat 48552925  T
Q  433 caacaaaacccttataaacaggtccaaatccaccttcacctaacatattactccatgagaaattatgtgttgcttct 509  Q
    |||||||||||||||| ||||||||||| ||||||||||| | || |||||||| ||| ||||||||||||||||||    
T  48552924 caacaaaacccttatacacaggtccaaaaccaccttcaccaagcaaattactccttgaaaaattatgtgttgcttct 48552848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 48553375 - 48553314
Alignment:
Q  15 tatccaattaacttcacaagatgtggatgacttagttgtccaagaaatataatctctgccta 76  Q
    |||||||||||||| |||||||||||||| || || ||||||||||||||||||||||||||    
T  48553375 tatccaattaacttgacaagatgtggatgtctaagctgtccaagaaatataatctctgccta 48553314  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 472
Target Start/End: Original strand, 10845900 - 10845985
Alignment:
Q  387 ttaacagctacagtttgagcctttaacccttgtctaagtttatcatcaacaaaacccttataaacaggtccaaatccaccttcacc 472  Q
    |||||||| |||| ||||||||| || ||||||||||  |||||||||| | ||||||||| ||||| |||||| |||||||||||    
T  10845900 ttaacagcaacaggttgagccttcaaaccttgtctaaaattatcatcaaaataacccttatgaacagttccaaaaccaccttcacc 10845985  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 35023763 - 35023715
Alignment:
Q  214 ccatcgtgattttgacaaaaattatactttaaagcttcaacaaaattat 262  Q
    |||| |||| ||||||||||  |||||||||||||||||| ||||||||    
T  35023763 ccatggtgactttgacaaaagctatactttaaagcttcaataaaattat 35023715  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 1573965 - 1573924
Alignment:
Q  220 tgattttgacaaaaattatactttaaagcttcaacaaaatta 261  Q
    |||||||||||||| |||||||||||||||| | ||||||||    
T  1573965 tgattttgacaaaagttatactttaaagctttatcaaaatta 1573924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 51938995 - 51939043
Alignment:
Q  13 aatatccaattaacttcacaagatgtggatgacttagttgtccaagaaa 61  Q
    |||||||||| ||||||||||| ||| |||| |||||||| ||||||||    
T  51938995 aatatccaatcaacttcacaaggtgttgatgtcttagttgaccaagaaa 51939043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 27161003 - 27160963
Alignment:
Q  221 gattttgacaaaaattatactttaaagcttcaacaaaatta 261  Q
    ||||||| ||||| ||||||||| |||||||||||||||||    
T  27161003 gattttggcaaaagttatactttgaagcttcaacaaaatta 27160963  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 34444304 - 34444344
Alignment:
Q  222 attttgacaaaaattatactttaaagcttcaacaaaattat 262  Q
    ||||||| |||||||| |||||||| |||||||||||||||    
T  34444304 attttgataaaaattacactttaaaacttcaacaaaattat 34444344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 5933271 - 5933231
Alignment:
Q  219 gtgattttgacaaaaattatactttaaagcttcaacaaaat 259  Q
    |||||||||||||||||||||||||  ||||| ||||||||    
T  5933271 gtgattttgacaaaaattatactttgtagctttaacaaaat 5933231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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