View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_low_101 (Length: 248)

Name: NF1590_low_101
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_low_101
NF1590_low_101
[»] chr4 (16 HSPs)
chr4 (167-244)||(6875628-6875705)
chr4 (17-102)||(6875478-6875563)
chr4 (28-102)||(19468182-19468256)
chr4 (45-91)||(3085357-3085403)
chr4 (45-102)||(19451016-19451073)
chr4 (45-97)||(17409829-17409881)
chr4 (41-101)||(36000056-36000116)
chr4 (28-91)||(40049547-40049610)
chr4 (45-91)||(23545481-23545527)
chr4 (47-97)||(24684843-24684893)
chr4 (45-102)||(27019265-27019322)
chr4 (41-90)||(36968289-36968338)
chr4 (45-97)||(3728254-3728306)
chr4 (45-101)||(8736927-8736983)
chr4 (45-101)||(42480039-42480095)
chr4 (45-97)||(45742373-45742425)
[»] chr1 (22 HSPs)
chr1 (41-91)||(36578333-36578383)
chr1 (45-101)||(41624835-41624891)
chr1 (45-102)||(6180191-6180248)
chr1 (45-102)||(7824974-7825031)
chr1 (56-101)||(36490795-36490840)
chr1 (45-101)||(6754477-6754533)
chr1 (45-101)||(39150443-39150499)
chr1 (41-101)||(47355494-47355554)
chr1 (54-100)||(7520115-7520161)
chr1 (45-102)||(35512730-35512787)
chr1 (45-97)||(13321881-13321933)
chr1 (45-101)||(17919459-17919515)
chr1 (45-97)||(22167340-22167392)
chr1 (45-101)||(23591703-23591759)
chr1 (39-87)||(25186838-25186886)
chr1 (45-101)||(30171884-30171940)
chr1 (45-101)||(30187425-30187481)
chr1 (41-73)||(38539088-38539120)
chr1 (41-73)||(38561306-38561338)
chr1 (48-92)||(43317498-43317542)
chr1 (45-101)||(44918030-44918086)
chr1 (45-101)||(51382377-51382433)
[»] chr8 (21 HSPs)
chr8 (45-101)||(7750673-7750729)
chr8 (45-91)||(26682073-26682119)
chr8 (45-101)||(14816242-14816298)
chr8 (45-101)||(14829442-14829498)
chr8 (45-100)||(8284687-8284742)
chr8 (45-102)||(38843709-38843766)
chr8 (45-102)||(45005975-45006032)
chr8 (45-101)||(7140575-7140631)
chr8 (39-87)||(23840235-23840283)
chr8 (45-101)||(35678391-35678447)
chr8 (40-100)||(40568313-40568373)
chr8 (46-101)||(10974671-10974726)
chr8 (39-73)||(26364134-26364168)
chr8 (45-102)||(9580225-9580282)
chr8 (39-92)||(39701928-39701981)
chr8 (45-101)||(3306171-3306227)
chr8 (45-101)||(9743867-9743923)
chr8 (45-101)||(12131988-12132044)
chr8 (49-97)||(12346015-12346063)
chr8 (45-101)||(38527826-38527882)
chr8 (41-73)||(40716276-40716308)
[»] chr7 (15 HSPs)
chr7 (39-91)||(47457588-47457640)
chr7 (32-97)||(39475840-39475905)
chr7 (45-91)||(19868119-19868165)
chr7 (45-101)||(7170008-7170064)
chr7 (45-101)||(19889346-19889402)
chr7 (45-101)||(25709516-25709572)
chr7 (45-90)||(4969778-4969823)
chr7 (23-92)||(12086056-12086125)
chr7 (40-101)||(36548576-36548637)
chr7 (45-97)||(4161887-4161939)
chr7 (45-101)||(9331967-9332023)
chr7 (60-100)||(31066854-31066894)
chr7 (41-73)||(32117816-32117848)
chr7 (45-101)||(39869128-39869184)
chr7 (45-97)||(45501464-45501516)
[»] chr2 (18 HSPs)
chr2 (45-102)||(43806365-43806422)
chr2 (40-87)||(12919482-12919529)
chr2 (39-97)||(7720114-7720172)
chr2 (45-87)||(36909506-36909548)
chr2 (45-101)||(12016672-12016728)
chr2 (45-101)||(14377430-14377486)
chr2 (45-101)||(15411739-15411795)
chr2 (45-97)||(26003612-26003664)
chr2 (45-101)||(27665160-27665216)
chr2 (39-87)||(40503112-40503160)
chr2 (45-102)||(16754976-16755033)
chr2 (45-78)||(29981364-29981397)
chr2 (45-97)||(16919274-16919326)
chr2 (45-101)||(19228431-19228487)
chr2 (57-101)||(22162193-22162237)
chr2 (45-101)||(22705460-22705516)
chr2 (45-101)||(39904164-39904220)
chr2 (41-101)||(40562194-40562254)
[»] chr6 (9 HSPs)
chr6 (45-97)||(17596318-17596370)
chr6 (45-102)||(34692359-34692416)
chr6 (45-87)||(1814912-1814954)
chr6 (47-101)||(12454073-12454127)
chr6 (45-101)||(5363009-5363065)
chr6 (45-101)||(14228242-14228298)
chr6 (45-97)||(24979270-24979322)
chr6 (45-101)||(28943885-28943941)
chr6 (45-97)||(30623331-30623383)
[»] chr3 (18 HSPs)
chr3 (49-101)||(2379186-2379238)
chr3 (45-101)||(37444152-37444208)
chr3 (58-92)||(28992903-28992937)
chr3 (35-101)||(32553362-32553428)
chr3 (41-91)||(35415148-35415198)
chr3 (45-102)||(42180057-42180114)
chr3 (45-102)||(54527822-54527879)
chr3 (45-101)||(11610920-11610976)
chr3 (45-97)||(27549543-27549595)
chr3 (45-85)||(51618055-51618095)
chr3 (45-92)||(39365257-39365304)
chr3 (41-87)||(8497554-8497600)
chr3 (45-91)||(50204408-50204454)
chr3 (41-97)||(45983510-45983564)
chr3 (45-101)||(20938062-20938118)
chr3 (45-101)||(47386927-47386983)
chr3 (45-97)||(51567939-51567991)
chr3 (39-91)||(54621344-54621396)
[»] scaffold0036 (1 HSPs)
scaffold0036 (39-101)||(94135-94197)
[»] scaffold0129 (1 HSPs)
scaffold0129 (45-102)||(13774-13831)
[»] chr5 (17 HSPs)
chr5 (45-102)||(3398225-3398282)
chr5 (45-102)||(18841821-18841878)
chr5 (45-101)||(8103696-8103752)
chr5 (45-101)||(11636737-11636793)
chr5 (39-91)||(11692758-11692810)
chr5 (35-87)||(24014818-24014870)
chr5 (54-101)||(11375974-11376021)
chr5 (45-92)||(29855995-29856042)
chr5 (47-90)||(33072684-33072727)
chr5 (41-91)||(11360187-11360237)
chr5 (45-87)||(23995552-23995594)
chr5 (40-97)||(3737996-3738053)
chr5 (47-88)||(11250086-11250127)
chr5 (45-102)||(26376685-26376742)
chr5 (45-101)||(2795529-2795585)
chr5 (38-86)||(28378708-28378756)
chr5 (45-89)||(30328455-30328499)
[»] scaffold0631 (1 HSPs)
scaffold0631 (47-90)||(449-492)
[»] scaffold0128 (1 HSPs)
scaffold0128 (64-101)||(44394-44431)
[»] scaffold0061 (1 HSPs)
scaffold0061 (45-101)||(52895-52951)
[»] scaffold0017 (1 HSPs)
scaffold0017 (45-101)||(145683-145739)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 6875628 - 6875705
Alignment:
Q  167 gtgaccattttaatttttataacatttgcgcatcgtagaaaaactctttttatattcacaaaatttttcatctcactc 244  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  6875628 gtgaccattttaatttttataacatttgcgcatcatagaaaaactctttttatattcacaaaatttttcatttcactc 6875705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 6875478 - 6875563
Alignment:
Q  17 aaatatatccaatttttatatagatttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattgg 102  Q
    ||||||||| ||||||||||||  ||| |||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  6875478 aaatatatcaaatttttatataagtttgtctaacatttgcaatattgcacatgttaaaacaactaaaaatagtaatattttattgg 6875563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 19468182 - 19468256
Alignment:
Q  28 atttttatatagatttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattgg 102  Q
    |||| ||||||| ||| |||||||| ||||| ||||||||||||||||||| ||| ||||||||| |||| ||||    
T  19468182 atttatatataggtttgtctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaactttttcttgg 19468256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 3085357 - 3085403
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaa 91  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||||    
T  3085357 tctaacatgtgcaacattgcacatgttaaaacaattaatagtagtaa 3085403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 19451073 - 19451016
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattgg 102  Q
    |||||||| ||||| ||||||||||||||||||| ||| ||||||||| |||| ||||    
T  19451073 tctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaactttttcttgg 19451016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 17409829 - 17409881
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    |||||||| ||||| ||||||||||||||||||| ||| ||||||||| ||||    
T  17409829 tctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaacttttt 17409881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 36000116 - 36000056
Alignment:
Q  41 tttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||||||| |||||||||| |||||||||   || ||||||||||||| ||||||||    
T  36000116 tttatctaacatatgcaatattgtacatgttaaggtaactaaaagtagtaactttttattg 36000056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 40049547 - 40049610
Alignment:
Q  28 atttttatatagatttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaa 91  Q
    |||||| ||| | ||| |||||||| |||||||||||||||||||||  || ||||||||||||    
T  40049547 atttttttatgggtttgtctaacatgtgcaatattgcacatgttaaagtaactaaaagtagtaa 40049610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 23545481 - 23545527
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaa 91  Q
    |||||||| ||||| ||||||||||||||||||| ||| ||||||||    
T  23545481 tctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaa 23545527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 24684843 - 24684893
Alignment:
Q  47 taacatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    |||||||||||| ||| ||||||||||||||| ||| ||||||||| ||||    
T  24684843 taacatttgcaacattacacatgttaaaacaactaatagtagtaacttttt 24684893  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 27019265 - 27019322
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattgg 102  Q
    |||||| | ||||| ||||||||||||||||||| ||| ||||||||| |||| ||||    
T  27019265 tctaacgtgtgcaacattgcacatgttaaaacaactaatagtagtaactttttcttgg 27019322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 36968289 - 36968338
Alignment:
Q  41 tttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagta 90  Q
    |||||||||||| ||||||||| |||||||||||  || |||||||||||    
T  36968289 tttatctaacatgtgcaatattacacatgttaaagtaactaaaagtagta 36968338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 3728254 - 3728306
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    |||||||| | |||||||| |||||||| ||||| ||||||||||||| ||||    
T  3728254 tctaacatgtacaatattgaacatgttataacaactaaaagtagtaacttttt 3728306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 8736983 - 8736927
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||| |||||||||||||| |||  ||||||||||||  ||||||||    
T  8736983 tctaacatgtgcaacattgcacatgttaagacatctaaaagtagtaattttttattg 8736927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 42480095 - 42480039
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||| ||| ||||||||||||||| ||||| ||| ||| ||||| ||||||||||||    
T  42480095 tctagcatatgcaatattgcacatcttaaagcaactaagagtagcaacattttattg 42480039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 45742373 - 45742425
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    |||||||| ||||| ||||||||||||||||||| ||| |||| |||| ||||    
T  45742373 tctaacatgtgcaacattgcacatgttaaaacaactaatagtattaacttttt 45742425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 36578333 - 36578383
Alignment:
Q  41 tttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaa 91  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  36578333 tttatctaacatgtgcaatattgcacatgttaaagcaattaaaagtagtaa 36578383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 41624835 - 41624891
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||| ||| ||||| ||||||| ||||||||    
T  41624835 tctaacatgtgcaatattgcacatgttaaagcaactaaaaatagtaactttttattg 41624891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 6180191 - 6180248
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattgg 102  Q
    |||||||| ||||| ||||||||||||||||||| ||| ||||||||| |||| ||||    
T  6180191 tctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaactttttcttgg 6180248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 7825031 - 7824974
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattgg 102  Q
    |||||||| ||||| ||||||||||||||||||| ||| ||||||||| |||| ||||    
T  7825031 tctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaactttttcttgg 7824974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 36490795 - 36490840
Alignment:
Q  56 caatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    ||||||||||||||||||| ||||||||||||||||  ||||||||    
T  36490795 caatattgcacatgttaaagcaattaaaagtagtaagtttttattg 36490840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 6754477 - 6754533
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||  ||| ||||| ||||||| ||||||||    
T  6754477 tctaacatgtgcaatattgcacatgttaaggcaactaaaaatagtaactttttattg 6754533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 39150499 - 39150443
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||  ||| ||||||||||||| ||| ||||    
T  39150499 tctaacatgtgcaatattgcacatgttaaggcaactaaaagtagtaacttttcattg 39150443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 47355554 - 47355494
Alignment:
Q  41 tttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    ||||||||| || ||||||||||||||||||||| ||| ||||||||  ||| ||||||||    
T  47355554 tttatctaaaatgtgcaatattgcacatgttaaagcaactaaaagtataaactttttattg 47355494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 7520161 - 7520115
Alignment:
Q  54 tgcaatattgcacatgttaaaacaattaaaagtagtaacattttatt 100  Q
    ||||||||||||||||||||| ||| ||||||||||||  |||||||    
T  7520161 tgcaatattgcacatgttaaagcaactaaaagtagtaaatttttatt 7520115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 35512730 - 35512787
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattgg 102  Q
    |||||||| ||||| |||||| |||||||||||| ||| ||||||||| |||| ||||    
T  35512730 tctaacatgtgcaacattgcaaatgttaaaacaactaatagtagtaactttttcttgg 35512787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 13321881 - 13321933
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    |||||||| ||||| |||| |||||||||||||| ||| ||||||||| ||||    
T  13321881 tctaacatgtgcaacattgtacatgttaaaacaactaatagtagtaacttttt 13321933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 17919459 - 17919515
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| |||||||||| |||||||||  ||| ||||||||||||| ||| ||||    
T  17919459 tctaacatgtgcaatattgtacatgttaaggcaactaaaagtagtaacttttcattg 17919515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 22167340 - 22167392
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    |||| ||| ||||| ||||||||||||||||||| ||| ||||||||| ||||    
T  22167340 tctaccatgtgcaacattgcacatgttaaaacaactaatagtagtaacttttt 22167392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 23591703 - 23591759
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||| ||||||||||||||| ||| ||||| ||||||  ||||||||    
T  23591703 tctaacatgtgcaacattgcacatgttaaagcaactaaaattagtaagtttttattg 23591759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 25186838 - 25186886
Alignment:
Q  39 gatttatctaacatttgcaatattgcacatgttaaaacaattaaaagta 87  Q
    ||||| ||||| || ||||| ||||||||||||||||||| ||||||||    
T  25186838 gatttgtctaatatgtgcaacattgcacatgttaaaacaactaaaagta 25186886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 30171884 - 30171940
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||| |||||||||||||| |||  ||||||||||||  ||||||||    
T  30171884 tctaacatgtgcaacattgcacatgttaagacatctaaaagtagtaattttttattg 30171940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 30187425 - 30187481
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||| |||||||||||||| |||  ||||||||||||  ||||||||    
T  30187425 tctaacatgtgcaacattgcacatgttaagacatctaaaagtagtaattttttattg 30187481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 38539088 - 38539120
Alignment:
Q  41 tttatctaacatttgcaatattgcacatgttaa 73  Q
    |||||||||||| ||||||||||||||||||||    
T  38539088 tttatctaacatgtgcaatattgcacatgttaa 38539120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 38561306 - 38561338
Alignment:
Q  41 tttatctaacatttgcaatattgcacatgttaa 73  Q
    |||||||||||| ||||||||||||||||||||    
T  38561306 tttatctaacatgtgcaatattgcacatgttaa 38561338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 43317498 - 43317542
Alignment:
Q  48 aacatttgcaatattgcacatgttaaaacaattaaaagtagtaac 92  Q
    ||||| |||||||||| |||||||||| ||| |||||||||||||    
T  43317498 aacatgtgcaatattgtacatgttaaagcaactaaaagtagtaac 43317542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 44918030 - 44918086
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||  ||||||||    
T  44918030 tctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaaatttttattg 44918086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 51382377 - 51382433
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||| ||| ||||    
T  51382377 tctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttcattg 51382433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 7750673 - 7750729
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  7750673 tctaacatgtgcaatattgcacatgttaaaacaactaaaagtagcaactttttattg 7750729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 26682073 - 26682119
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaa 91  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||    
T  26682073 tctaacatgtgcaatattgcacatgttaaaacaactaaaagtagtaa 26682119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 14816298 - 14816242
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| |||||||||||||||||||||  || ||||||||||||| ||||||||    
T  14816298 tctaacatgtgcaatattgcacatgttaaagaaactaaaagtagtaactttttattg 14816242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 14829442 - 14829498
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| |||||||||||||||||||||  || ||||||||||||| ||||||||    
T  14829442 tctaacatgtgcaatattgcacatgttaaagaaactaaaagtagtaactttttattg 14829498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 8284742 - 8284687
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttatt 100  Q
    |||||||| |||| |||||||||||||||| ||| ||||||||||||| |||||||    
T  8284742 tctaacatgtgcagtattgcacatgttaaagcaactaaaagtagtaactttttatt 8284687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 38843709 - 38843766
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattgg 102  Q
    |||||||| ||||| ||||||||||||||||||| ||| ||||||||| |||| ||||    
T  38843709 tctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaactttttcttgg 38843766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 45005975 - 45006032
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattgg 102  Q
    |||||||| ||||| ||||||||||||||||||| ||| ||||||||| |||| ||||    
T  45005975 tctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaactttttcttgg 45006032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 7140631 - 7140575
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||| ||||||||    
T  7140631 tctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaactttttattg 7140575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 23840235 - 23840283
Alignment:
Q  39 gatttatctaacatttgcaatattgcacatgttaaaacaattaaaagta 87  Q
    ||||| |||||||| ||||| || |||||||||||||||||||||||||    
T  23840235 gatttgtctaacatgtgcaacatggcacatgttaaaacaattaaaagta 23840283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 35678447 - 35678391
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| |||||||||||||||||||||  || ||||||||||||| ||| ||||    
T  35678447 tctaacatgtgcaatattgcacatgttaaagaaactaaaagtagtaacttttcattg 35678391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 40568313 - 40568373
Alignment:
Q  40 atttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttatt 100  Q
    |||| |||||||  ||||||||| ||||||||||||||| ||||||| ||||| |||||||    
T  40568313 atttgtctaacacatgcaatatttcacatgttaaaacaactaaaagttgtaactttttatt 40568373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 10974726 - 10974671
Alignment:
Q  46 ctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    ||||||| |||| ||||| | |||||||| ||| ||||||||||||||||||||||    
T  10974726 ctaacatatgcactattgtatatgttaaagcaactaaaagtagtaacattttattg 10974671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 26364168 - 26364134
Alignment:
Q  39 gatttatctaacatttgcaatattgcacatgttaa 73  Q
    |||||||||||||| ||||||||||||||||||||    
T  26364168 gatttatctaacatgtgcaatattgcacatgttaa 26364134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 9580282 - 9580225
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattgg 102  Q
    ||||| || ||||| ||||||||||||||||||| ||| ||||||||| |||| ||||    
T  9580282 tctaatatgtgcaacattgcacatgttaaaacaactaatagtagtaactttttcttgg 9580225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 39701981 - 39701928
Alignment:
Q  39 gatttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaac 92  Q
    ||||| |||||||| ||||||||||||||||||||   || |||||||||||||    
T  39701981 gatttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaac 39701928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 3306227 - 3306171
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||  ||||||||    
T  3306227 tctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaagtttttattg 3306171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 9743867 - 9743923
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||  |||||||| |||| ||||||||||||  ||||||||    
T  9743867 tctaacatgtgcaatattgtgcatgttaagacaactaaaagtagtaattttttattg 9743923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 12131988 - 12132044
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||| |||||||||||||||  || ||||||||| ||| ||||||||    
T  12131988 tctaacatgtgcaacattgcacatgttaaagaaactaaaagtagcaactttttattg 12132044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 12346015 - 12346063
Alignment:
Q  49 acatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    |||| ||||| ||| ||||||||||||||||||| ||||||||| ||||    
T  12346015 acatgtgcaacattacacatgttaaaacaattaatagtagtaacttttt 12346063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 38527826 - 38527882
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||  ||| |||||||| |||| ||| ||||    
T  38527826 tctaacatgtgcaatattgcacatgttaaggcaactaaaagtaataacttttcattg 38527882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 40716276 - 40716308
Alignment:
Q  41 tttatctaacatttgcaatattgcacatgttaa 73  Q
    |||||||||||| ||||||||||||||||||||    
T  40716276 tttatctaacatgtgcaatattgcacatgttaa 40716308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 47457640 - 47457588
Alignment:
Q  39 gatttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaa 91  Q
    ||||| |||||||| ||||||||||||||||||||||||| ||||||||||||    
T  47457640 gatttgtctaacatgtgcaatattgcacatgttaaaacaactaaaagtagtaa 47457588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 39475840 - 39475905
Alignment:
Q  32 ttatatagatttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    |||||| ||||| |||||||| ||||| ||||||||||||||||||| ||| ||||||||| ||||    
T  39475840 ttatatggatttctctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaacttttt 39475905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 19868119 - 19868165
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaa 91  Q
    |||||||| |||||||||||||||||||| |||| ||||||||||||    
T  19868119 tctaacatgtgcaatattgcacatgttaagacaactaaaagtagtaa 19868165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 7170008 - 7170064
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||  ||| ||||| ||||||| ||||||||    
T  7170008 tctaacatgtgcaatattgcacatgttaaggcaactaaaaatagtaactttttattg 7170064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 19889346 - 19889402
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||  ||| ||||||||||||| ||| ||||    
T  19889346 tctaacatgtgcaatattgcacatgttaaggcaactaaaagtagtaacttttcattg 19889402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 25709572 - 25709516
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| || |||||||||||||||||| ||| ||||||||||||  ||||||||    
T  25709572 tctaacatgtgaaatattgcacatgttaaatcaactaaaagtagtaattttttattg 25709516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 4969778 - 4969823
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagta 90  Q
    |||||||| ||||| ||||||||||||||||||| ||| |||||||    
T  4969778 tctaacatgtgcaacattgcacatgttaaaacaactaatagtagta 4969823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 12086125 - 12086056
Alignment:
Q  23 atccaatttttatatagatttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaac 92  Q
    |||| ||||||| | || ||| |||||||| || |||||||||||||||||  ||| |||||||||||||    
T  12086125 atcctatttttaaaaaggtttgtctaacatgtgtaatattgcacatgttaaggcaactaaaagtagtaac 12086056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 36548637 - 36548576
Alignment:
Q  40 atttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||| |||||||| ||||||||||||||||||||   || ||||||||||||  ||||||||    
T  36548637 atttgtctaacatgtgcaatattgcacatgttaagggaactaaaagtagtaattttttattg 36548576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 4161887 - 4161939
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    |||||||| || ||||||||||||||||||  || ||||||||||||| ||||    
T  4161887 tctaacatgtgtaatattgcacatgttaaaggaactaaaagtagtaacttttt 4161939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 9331967 - 9332023
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||| ||| ||||    
T  9331967 tctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttcattg 9332023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 31066894 - 31066854
Alignment:
Q  60 attgcacatgttaaaacaattaaaagtagtaacattttatt 100  Q
    |||||||||||||||| || ||||||||||||| |||||||    
T  31066894 attgcacatgttaaaataagtaaaagtagtaactttttatt 31066854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 32117816 - 32117848
Alignment:
Q  41 tttatctaacatttgcaatattgcacatgttaa 73  Q
    |||||||||||| ||||||||||||||||||||    
T  32117816 tttatctaacatgtgcaatattgcacatgttaa 32117848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 39869128 - 39869184
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| |||||||||||||||||||||  || ||||| ||||||| ||| ||||    
T  39869128 tctaacatatgcaatattgcacatgttaaagaaactaaaaatagtaacttttcattg 39869184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 45501464 - 45501516
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    |||||||| ||||| |||||||||||||||| || ||| ||||||||| ||||    
T  45501464 tctaacatgtgcaacattgcacatgttaaaataactaatagtagtaacttttt 45501516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 43806365 - 43806422
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattgg 102  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||||| |||| ||||    
T  43806365 tctaacatgtgcaacattgcacatgttaaaacaattaatagtagtaactttttcttgg 43806422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 12919529 - 12919482
Alignment:
Q  40 atttatctaacatttgcaatattgcacatgttaaaacaattaaaagta 87  Q
    |||| |||||||| ||||||||||||||||||||| ||||||||||||    
T  12919529 atttgtctaacatgtgcaatattgcacatgttaaagcaattaaaagta 12919482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 7720114 - 7720172
Alignment:
Q  39 gatttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    ||||| |||||||| ||||| ||||||||||||||||||| ||| ||||||||| ||||    
T  7720114 gatttgtctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaacttttt 7720172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 36909548 - 36909506
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagta 87  Q
    |||||||| ||||||||| ||||||||||||||||||||||||    
T  36909548 tctaacatatgcaatattacacatgttaaaacaattaaaagta 36909506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 12016672 - 12016728
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||| ||||||||    
T  12016672 tctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaactttttattg 12016728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 14377430 - 14377486
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||  ||||||||||||||||||||  ||| ||||||||||||| ||||||||    
T  14377430 tctaacacgtgcaatattgcacatgttaaggcaactaaaagtagtaactttttattg 14377486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 15411795 - 15411739
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| |||||||||||||||||||||  || ||||||||||||  ||||||||    
T  15411795 tctaacatgtgcaatattgcacatgttaaagtaactaaaagtagtaattttttattg 15411739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 26003664 - 26003612
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    |||||||| ||||| ||||||||||||||||||| ||| ||||||||| ||||    
T  26003664 tctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaacttttt 26003612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 27665216 - 27665160
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||  ||| ||||||||||||| ||| ||||    
T  27665216 tctaacatgtgcaatattgcacatgttaaggcaactaaaagtagtaacttttcattg 27665160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 40503160 - 40503112
Alignment:
Q  39 gatttatctaacatttgcaatattgcacatgttaaaacaattaaaagta 87  Q
    |||||||||||||| ||||||||  ||||| ||||||||||||||||||    
T  40503160 gatttatctaacatatgcaatatcacacatattaaaacaattaaaagta 40503112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 16754976 - 16755033
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattgg 102  Q
    |||||||| ||||| |||||| |||||||||||| ||| ||||||||| |||| ||||    
T  16754976 tctaacatgtgcaacattgcaaatgttaaaacaactaatagtagtaacttttttttgg 16755033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 29981397 - 29981364
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaa 78  Q
    |||||||| |||||||||||||||||||||||||    
T  29981397 tctaacatatgcaatattgcacatgttaaaacaa 29981364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 16919326 - 16919274
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||| ||||    
T  16919326 tctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttt 16919274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 19228431 - 19228487
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||| ||| ||||    
T  19228431 tctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttcattg 19228487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 22162237 - 22162193
Alignment:
Q  57 aatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||||||||||||  ||| ||||||||||||| ||||||||    
T  22162237 aatattgcacatgttaaggcaactaaaagtagtaactttttattg 22162193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 22705460 - 22705516
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||| ||| ||||    
T  22705460 tctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttcattg 22705516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 39904220 - 39904164
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||| ||| ||||    
T  39904220 tctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttcattg 39904164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 40562254 - 40562194
Alignment:
Q  41 tttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| |||||||||||||| ||||||||||  | ||||||| |||||  ||||||||    
T  40562254 tttatctaccatttgcaatattgtacatgttaaagtagttaaaagcagtaagtttttattg 40562194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 17596318 - 17596370
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    |||||||| |||||||||||||||||||| |||| ||||||||||||| ||||    
T  17596318 tctaacatgtgcaatattgcacatgttaagacaactaaaagtagtaacttttt 17596370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 34692359 - 34692416
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattgg 102  Q
    |||||||| ||||| ||||||||||||||||||| ||| ||||||||| |||| ||||    
T  34692359 tctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaactttttcttgg 34692416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 1814954 - 1814912
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagta 87  Q
    |||||||| ||||||||||||||||||||| ||| ||||||||    
T  1814954 tctaacatgtgcaatattgcacatgttaaagcaactaaaagta 1814912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 12454073 - 12454127
Alignment:
Q  47 taacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||| |||||||||||||||||||| | ||||||| |||||||  ||||||||    
T  12454073 taacatgtgcaatattgcacatgttaagaaaattaaatgtagtaattttttattg 12454127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 5363065 - 5363009
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||| ||| ||||    
T  5363065 tctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttcattg 5363009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 14228298 - 14228242
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||   |||||||||||| ||  ||||||||    
T  14228298 tctaacatgtgcaatattgcacatgttaaggtaattaaaagtagcaagtttttattg 14228242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 24979322 - 24979270
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    |||||||| ||||| ||||||||||||||||||| ||| | ||||||| ||||    
T  24979322 tctaacatgtgcaacattgcacatgttaaaacaactaataatagtaacttttt 24979270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 28943941 - 28943885
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||   |||||||||||| ||  ||||||||    
T  28943941 tctaacatgtgcaatattgcacatgttaaggtaattaaaagtagcaagtttttattg 28943885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 30623331 - 30623383
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    |||||||| ||||| ||| ||||||||||||||| ||| ||||||||| ||||    
T  30623331 tctaacatgtgcaacattacacatgttaaaacaactaatagtagtaacttttt 30623383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 2379238 - 2379186
Alignment:
Q  49 acatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||| ||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  2379238 acatgtgcaatattgcacatgttaaaacaactaaaagtagtaagtttttattg 2379186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 37444152 - 37444208
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||  ||| ||||||||||||| ||||||||    
T  37444152 tctaacatgtgcaatattgcacatgttaaggcaactaaaagtagtaactttttattg 37444208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 92
Target Start/End: Complemental strand, 28992937 - 28992903
Alignment:
Q  58 atattgcacatgttaaaacaattaaaagtagtaac 92  Q
    |||||||||||||||||||||||||||||||||||    
T  28992937 atattgcacatgttaaaacaattaaaagtagtaac 28992903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 32553362 - 32553428
Alignment:
Q  35 tatagatttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    ||||| |||||||||||| ||||||||| ||||||||||   |||||||||||||||| ||| ||||    
T  32553362 tataggtttatctaacatgtgcaatattacacatgttaaggtaattaaaagtagtaacttttcattg 32553428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 35415198 - 35415148
Alignment:
Q  41 tttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaa 91  Q
    |||||||||||| |||| |||||||||||||||||||| ||||| ||||||    
T  35415198 tttatctaacatgtgcattattgcacatgttaaaacaactaaaaatagtaa 35415148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 42180057 - 42180114
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattgg 102  Q
    |||||||| ||||| ||||||||||||||||||| ||| ||||||||| |||| ||||    
T  42180057 tctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaactttttcttgg 42180114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 54527879 - 54527822
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattgg 102  Q
    |||||||| ||||| ||||||||||||||||||| ||| ||||||||| |||| ||||    
T  54527879 tctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaactttttcttgg 54527822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 11610920 - 11610976
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||  ||| ||||||||||||| ||| ||||    
T  11610920 tctaacatgtgcaatattgcacatgttaaggcaactaaaagtagtaacttttcattg 11610976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 27549543 - 27549595
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    ||||| || ||||| ||||||||||||||||||| |||||||||||| |||||    
T  27549543 tctaatatgtgcaacattgcacatgttaaaacaactaaaagtagtaatatttt 27549595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 51618055 - 51618095
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaag 85  Q
    |||||||| ||||||||||||||||||||||||| ||||||    
T  51618055 tctaacatgtgcaatattgcacatgttaaaacaactaaaag 51618095  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 39365304 - 39365257
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaac 92  Q
    |||||||| ||||||||||||||||||||| | | |||||||||||||    
T  39365304 tctaacatgtgcaatattgcacatgttaaagctactaaaagtagtaac 39365257  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 8497600 - 8497554
Alignment:
Q  41 tttatctaacatttgcaatattgcacatgttaaaacaattaaaagta 87  Q
    ||||| |||||| ||||| ||||||||||||||||||| ||||||||    
T  8497600 tttatttaacatgtgcaacattgcacatgttaaaacaactaaaagta 8497554  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 50204408 - 50204454
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaa 91  Q
    |||||||| ||||| ||||||||||||||||||| ||| ||||||||    
T  50204408 tctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaa 50204454  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 45983510 - 45983564
Alignment:
Q  41 tttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    |||||||||||| ||||| |||  |||||||||||||||||| ||||||||| ||||    
T  45983510 tttatctaacatgtgcaacatt--acatgttaaaacaattaatagtagtaacttttt 45983564  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 20938062 - 20938118
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||   || |||||||| |||| ||||||||    
T  20938062 tctaacatgtgcaatattgcacatgttaaggtaactaaaagtaataactttttattg 20938118  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 47386927 - 47386983
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||| ||| ||||| ||| ||||||||||||  ||||||||    
T  47386927 tctaacatgtgcaatattgcgcatattaaagcaactaaaagtagtaagtttttattg 47386983  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 51567991 - 51567939
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    ||||||||  |||| ||||||||||||||||||| ||| ||||||||| ||||    
T  51567991 tctaacatgcgcaacattgcacatgttaaaacaactaatagtagtaacttttt 51567939  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 54621396 - 54621344
Alignment:
Q  39 gatttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaa 91  Q
    ||||| |||||||| |||||||||||| |||||||   |||||||||||||||    
T  54621396 gatttgtctaacatgtgcaatattgcatatgttaaggtaattaaaagtagtaa 54621344  T

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Target: scaffold0036 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 94197 - 94135
Alignment:
Q  39 gatttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    ||||| |||||||| ||||| ||||||||||||||| ||| ||||||||||||  ||||||||    
T  94197 gatttgtctaacatatgcaacattgcacatgttaaatcaactaaaagtagtaagtttttattg 94135  T

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Target: scaffold0129 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 13831 - 13774
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattgg 102  Q
    |||||||| ||||| ||||||||||||||||||| ||| ||||||||| |||| ||||    
T  13831 tctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaactttttcttgg 13774  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 3398225 - 3398282
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattgg 102  Q
    |||||||| ||||| ||||||||||||||||||| ||| ||||||||| |||| ||||    
T  3398225 tctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaactttttcttgg 3398282  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 18841878 - 18841821
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattgg 102  Q
    |||||||| ||||| ||||||||||||||||||| ||| ||||||||| |||| ||||    
T  18841878 tctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaacttttttttgg 18841821  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 8103752 - 8103696
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||  ||| ||||| ||||||| ||||||||    
T  8103752 tctaacatgtgcaatattgcacatgttaaggcaactaaaaatagtaactttttattg 8103696  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 11636737 - 11636793
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| |||||||||||||||||||||  || ||||||||||||| ||| ||||    
T  11636737 tctaacatgtgcaatattgcacatgttaaagaaactaaaagtagtaacttttcattg 11636793  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 11692810 - 11692758
Alignment:
Q  39 gatttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaa 91  Q
    ||||| |||||||| | |||||||||||||||||||| || ||||||||||||    
T  11692810 gatttgtctaacatgtacaatattgcacatgttaaaataactaaaagtagtaa 11692758  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 24014870 - 24014818
Alignment:
Q  35 tatagatttatctaacatttgcaatattgcacatgttaaaacaattaaaagta 87  Q
    ||||| ||| |||||||| ||||| ||||||||||||||||||| ||||||||    
T  24014870 tataggtttgtctaacatgtgcaacattgcacatgttaaaacaactaaaagta 24014818  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 11375974 - 11376021
Alignment:
Q  54 tgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    ||||||||||||||||||||| ||| ||||||||||||| ||| ||||    
T  11375974 tgcaatattgcacatgttaaagcaactaaaagtagtaacttttcattg 11376021  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 29856042 - 29855995
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaac 92  Q
    |||||||| ||||| ||||||||||||||||||| ||| |||||||||    
T  29856042 tctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaac 29855995  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 33072684 - 33072727
Alignment:
Q  47 taacatttgcaatattgcacatgttaaaacaattaaaagtagta 90  Q
    |||||| ||||||||||||||||||||| ||| |||||||||||    
T  33072684 taacatgtgcaatattgcacatgttaaatcaactaaaagtagta 33072727  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 11360187 - 11360237
Alignment:
Q  41 tttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaa 91  Q
    ||||| |||||| | ||||||| ||||||||||||||| ||||||||||||    
T  11360187 tttatttaacatgttcaatattacacatgttaaaacaactaaaagtagtaa 11360237  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 23995594 - 23995552
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagta 87  Q
    |||||||| |||||||||||||||||||||  |||||||||||    
T  23995594 tctaacatatgcaatattgcacatgttaaataaattaaaagta 23995552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 3738053 - 3737996
Alignment:
Q  40 atttatctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacatttt 97  Q
    |||| ||||| || ||||| ||||||||||||||||||| ||| ||||||||| ||||    
T  3738053 atttgtctaatatgtgcaacattgcacatgttaaaacaactaatagtagtaacttttt 3737996  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 11250127 - 11250086
Alignment:
Q  47 taacatttgcaatattgcacatgttaaaacaattaaaagtag 88  Q
    |||||| ||||||||||||||||||||| ||| |||||||||    
T  11250127 taacatgtgcaatattgcacatgttaaagcaactaaaagtag 11250086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 26376742 - 26376685
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattgg 102  Q
    |||||||| ||||| |||| |||||||||||||| ||| ||||||||| |||| ||||    
T  26376742 tctaacatgtgcaacattgtacatgttaaaacaaataatagtagtaactttttcttgg 26376685  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 2795529 - 2795585
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||| ||| ||||    
T  2795529 tctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttcattg 2795585  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 28378708 - 28378756
Alignment:
Q  38 agatttatctaacatttgcaatattgcacatgttaaaacaattaaaagt 86  Q
    |||||| |||| ||| |||||||||||||||||||||  ||||||||||    
T  28378708 agatttgtctagcatgtgcaatattgcacatgttaaagtaattaaaagt 28378756  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 30328499 - 30328455
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagt 89  Q
    |||||||| |||||||||||||||||||| | || ||||||||||    
T  30328499 tctaacatgtgcaatattgcacatgttaagataactaaaagtagt 30328455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0631 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0631
Description:

Target: scaffold0631; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 449 - 492
Alignment:
Q  47 taacatttgcaatattgcacatgttaaaacaattaaaagtagta 90  Q
    |||||| ||||||||||||||||||||| ||| |||||||||||    
T  449 taacatgtgcaatattgcacatgttaaatcaactaaaagtagta 492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 44431 - 44394
Alignment:
Q  64 cacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  44431 cacatgttaaaacaattaaaagtagtaaatttttattg 44394  T

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Target: scaffold0061 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 52951 - 52895
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||| ||| ||||    
T  52951 tctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttcattg 52895  T

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Target: scaffold0017 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 145683 - 145739
Alignment:
Q  45 tctaacatttgcaatattgcacatgttaaaacaattaaaagtagtaacattttattg 101  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||| ||| ||||    
T  145683 tctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttcattg 145739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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