View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_low_104 (Length: 245)

Name: NF1590_low_104
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_low_104
NF1590_low_104
[»] chr4 (11 HSPs)
chr4 (133-224)||(52191294-52191385)
chr4 (133-213)||(51038769-51038849)
chr4 (133-213)||(45829362-45829442)
chr4 (133-213)||(46192365-46192445)
chr4 (133-213)||(49243821-49243901)
chr4 (133-211)||(28093203-28093281)
chr4 (133-213)||(3672280-3672360)
chr4 (133-213)||(6112636-6112716)
chr4 (133-196)||(25437007-25437070)
chr4 (133-213)||(21391060-21391140)
chr4 (133-213)||(35544918-35544998)
[»] chr7 (18 HSPs)
chr7 (133-213)||(38321015-38321095)
chr7 (133-213)||(31148296-31148376)
chr7 (133-213)||(42221068-42221148)
chr7 (132-213)||(23980136-23980217)
chr7 (133-209)||(34108432-34108508)
chr7 (133-213)||(36346669-36346749)
chr7 (132-235)||(13108153-13108256)
chr7 (133-211)||(26972310-26972388)
chr7 (133-213)||(7699988-7700068)
chr7 (133-213)||(7700186-7700266)
chr7 (133-213)||(7700384-7700464)
chr7 (133-213)||(7700582-7700662)
chr7 (133-213)||(21807427-21807507)
chr7 (149-213)||(45782765-45782829)
chr7 (148-213)||(28307600-28307665)
chr7 (133-213)||(5811268-5811348)
chr7 (133-209)||(30887706-30887782)
chr7 (145-213)||(36957447-36957515)
[»] chr3 (16 HSPs)
chr3 (133-213)||(36370443-36370523)
chr3 (133-213)||(38231299-38231379)
chr3 (133-213)||(22894686-22894766)
chr3 (133-213)||(29460666-29460746)
chr3 (133-213)||(29471518-29471598)
chr3 (133-213)||(34750003-34750083)
chr3 (133-213)||(43999995-44000075)
chr3 (133-213)||(46112049-46112129)
chr3 (133-213)||(21559567-21559647)
chr3 (133-213)||(36749412-36749492)
chr3 (149-235)||(53638157-53638244)
chr3 (135-210)||(20856259-20856334)
chr3 (133-213)||(30735600-30735680)
chr3 (145-213)||(48200703-48200771)
chr3 (159-213)||(39467206-39467260)
chr3 (133-213)||(51339888-51339966)
[»] chr2 (9 HSPs)
chr2 (133-213)||(33732575-33732655)
chr2 (133-213)||(36315567-36315647)
chr2 (133-213)||(44958119-44958199)
chr2 (133-213)||(16089828-16089908)
chr2 (133-213)||(37914341-37914421)
chr2 (133-213)||(3831002-3831080)
chr2 (172-213)||(24137197-24137238)
chr2 (143-213)||(37498970-37499040)
chr2 (133-213)||(14573001-14573081)
[»] chr1 (10 HSPs)
chr1 (16-99)||(48275251-48275343)
chr1 (133-210)||(10146972-10147049)
chr1 (133-213)||(39249968-39250048)
chr1 (133-210)||(19258780-19258857)
chr1 (148-213)||(9642971-9643036)
chr1 (133-213)||(2509030-2509110)
chr1 (133-213)||(34307243-34307323)
chr1 (133-213)||(28647359-28647439)
chr1 (182-210)||(8848961-8848989)
chr1 (174-210)||(29099863-29099899)
[»] chr5 (15 HSPs)
chr5 (132-213)||(19596172-19596253)
chr5 (133-213)||(13347134-13347214)
chr5 (133-233)||(1815700-1815801)
chr5 (133-213)||(2237282-2237362)
chr5 (133-213)||(27553478-27553558)
chr5 (133-213)||(39370933-39371013)
chr5 (133-213)||(17225325-17225403)
chr5 (133-213)||(33404541-33404621)
chr5 (133-213)||(40888047-40888127)
chr5 (138-213)||(14831555-14831630)
chr5 (133-202)||(3725731-3725800)
chr5 (133-206)||(19124583-19124655)
chr5 (133-213)||(12164257-12164337)
chr5 (133-210)||(4300651-4300728)
chr5 (133-213)||(9408144-9408224)
[»] scaffold0062 (1 HSPs)
scaffold0062 (133-213)||(6724-6804)
[»] chr6 (4 HSPs)
chr6 (133-213)||(3987010-3987090)
chr6 (133-213)||(14022940-14023020)
chr6 (133-213)||(3118152-3118232)
chr6 (132-213)||(24208449-24208530)
[»] chr8 (10 HSPs)
chr8 (132-213)||(33726016-33726097)
chr8 (133-213)||(31552-31632)
chr8 (133-213)||(12665350-12665430)
chr8 (133-213)||(36189222-36189302)
chr8 (175-235)||(38845105-38845165)
chr8 (133-213)||(42162604-42162684)
chr8 (133-213)||(44081786-44081866)
chr8 (133-233)||(30432345-30432446)
chr8 (133-213)||(31318811-31318891)
chr8 (148-213)||(42668886-42668951)
[»] scaffold0043 (1 HSPs)
scaffold0043 (133-213)||(87269-87348)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 52191385 - 52191294
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagg 224  Q
    |||||||||||||| |||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52191385 ttatacatggaccaccttaggtggcatataccttttaacagccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagg 52191294  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 51038769 - 51038849
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||| |||||||| |||||||||| ||||   ||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  51038769 ttatatatggaccaccttaggtggcatacaaactttgacacccacacacaattgtgacatgtgacaaaaacattgaaagaa 51038849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 45829442 - 45829362
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| ||||  ||||||| | |||||||||| ||||||||||| | |||||||||||| |||||||||||||||||    
T  45829442 ttatacatgaaccactttaggtgacatacacctttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaa 45829362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 46192365 - 46192445
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| | || |||||||||| |||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||    
T  46192365 ttatacatgaatcaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaa 46192445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 49243821 - 49243901
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||||| |||||| ||| ||| ||||||| | |||||||||||| |||||||||||||||||    
T  49243821 ttatacatgaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggcaaaaacattgaaagaa 49243901  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 28093281 - 28093203
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaag 211  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||    
T  28093281 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaag 28093203  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 3672280 - 3672360
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||||| |||||| ||| ||| ||||||| | |||||||| ||| |||||||||||||||||    
T  3672280 ttatacatgaaccaccttaggtggcatacacccttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaa 3672360  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 6112636 - 6112716
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| ||||| |||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  6112636 ttatacatgaaccaccttagatggcatacaccattttacacccacacatatttgtgacacgtggcaaaaacattgaaagaa 6112716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 25437070 - 25437007
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtga 196  Q
    |||||||||||||| |||||||| | |||||||||||||| ||| ||| |||||||||||||||    
T  25437070 ttatacatggaccaccttaggtgacatacaccttttaacatccatacacaattgtgacatgtga 25437007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 21391140 - 21391060
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| ||||| |||| |||||| ||| ||||||||||| | |||||||| ||| |||||| ||||||||||    
T  21391140 ttatacatgaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaatattgaaagaa 21391060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 35544918 - 35544998
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| ||||||||||||||  |||||| ||| ||| ||||| | | |||||| | ||| |||||||||||||||||    
T  35544918 ttatacatgaaccatcttaggtggtatacaccattttacatccacatacatttgtgatacgtggcaaaaacattgaaagaa 35544998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 38321015 - 38321095
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||  ||||||||||||||| ||||| |||||||||||||| | |||||||||||||| |||||||||||||||||    
T  38321015 ttatacattaaccatcttaggtggcatacacattttaacacccacatacaattgtgacatgtggcaaaaacattgaaagaa 38321095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 31148296 - 31148376
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| ||||||||||||||| |||||| ||| ||||||||||| | ||||||||  || |||||||||||||||||    
T  31148296 ttatacatgaaccatcttaggtggcatacacccttttacacccacacacatttgtgacacatggcaaaaacattgaaagaa 31148376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 42221148 - 42221068
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||||| ||||| |||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  42221148 ttatacatgaaccaccttaggtggcatacacttttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaa 42221068  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 23980136 - 23980217
Alignment:
Q  132 gttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    |||||||||  |||| | |||||||| |||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||    
T  23980136 gttatacataaaccaccataggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaa 23980217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 34108432 - 34108508
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaa 209  Q
    ||||||||| |||| |||||||| | |||||| ||| ||||||||||| | ||||||||| ||||||||||||||||    
T  34108432 ttatacatgaaccaccttaggtgacatacacccttttacacccacacatatttgtgacatatgacaaaaacattgaa 34108508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 36346749 - 36346669
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||  ||||||||||||||| |||||| ||| ||||||| ||| | |||||||| ||| |||||||||||||||||    
T  36346749 ttatacataaaccatcttaggtggcatacacccttttacacccagacacatttgtgacacgtggcaaaaacattgaaagaa 36346669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 235
Target Start/End: Original strand, 13108153 - 13108256
Alignment:
Q  132 gttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggtgatg 231  Q
    |||||||||  |||| |||||| ||| |||||| ||| ||||||||||| | |||||||||||| ||||||| |||||||||  ||| | |||||||| |    
T  13108153 gttatacataaaccaccttaggcggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacgttgaaagaagagatgaaaggggtgagg 13108252  T
Q  232 atgt 235  Q
    ||||    
T  13108253 atgt 13108256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 26972388 - 26972310
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaag 211  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | || ||||| ||| |||||||||||||||    
T  26972388 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttatgacacgtggcaaaaacattgaaag 26972310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 7700068 - 7699988
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||  |||| ||||| |||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  7700068 ttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaa 7699988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 7700266 - 7700186
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||  |||| ||||| |||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  7700266 ttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaa 7700186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 7700464 - 7700384
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||  |||| ||||| |||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  7700464 ttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaa 7700384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 7700662 - 7700582
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||  |||| ||||| |||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  7700662 ttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaa 7700582  T

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Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 21807507 - 21807427
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| ||||| |||| |||||| ||| ||||||||||| | |||||| ||||| |||||| ||||||||||    
T  21807507 ttatacatgaaccaccttagatggcatacaccattttacacccacacaaatttgtgatatgtggcaaaaatattgaaagaa 21807427  T

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Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 45782829 - 45782765
Alignment:
Q  149 ttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| | ||| ||||||||||| | |||||||| |||||||||||||||||||||    
T  45782829 ttaggtggcatacatcattttacacccacacacatttgtgacacgtgacaaaaacattgaaagaa 45782765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 28307665 - 28307600
Alignment:
Q  148 cttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    |||||||||| |||||| ||| ||||||||||| | ||| |||| ||| |||||||||||||||||    
T  28307665 cttaggtggcatacacccttttacacccacacacatttgcgacacgtggcaaaaacattgaaagaa 28307600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 5811348 - 5811268
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||  |||| | |||||||| |||| | |||  |||||||||| | |||||||||||| |||||||||||||||||    
T  5811348 ttatacataaaccaccataggtggcatacatcctttttcacccacacacatttgtgacatgtggcaaaaacattgaaagaa 5811268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 30887706 - 30887782
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaa 209  Q
    ||||||||| || |||||||||||| |||||  ||| ||||||||| | | |||||||| ||  |||||||||||||    
T  30887706 ttatacatgaacaatcttaggtggcatacacacttttacacccacatacatttgtgacacgtagcaaaaacattgaa 30887782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 36957447 - 36957515
Alignment:
Q  145 catcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||||||| |||||| ||| ||| ||| ||| | |||||||| |||||||||| |||| |||||    
T  36957447 catcttaggtggcatacacccttttacatccatacatatttgtgacacgtgacaaaaatattgtaagaa 36957515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 36370523 - 36370443
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||| | |||||||||| ||||||||||| | ||||||||||||||||||||||||||||||    
T  36370523 ttatacatgaaccaccttaggtgtcatacacctttttacacccacacacatttgtgacatgtgacaaaaacattgaaagaa 36370443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 38231299 - 38231379
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||    
T  38231299 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaa 38231379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 22894686 - 22894766
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  22894686 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaa 22894766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 29460666 - 29460746
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||||| |||||| ||| |||||||||||   |||||||||||| |||||||||||||||||    
T  29460666 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggcaaaaacattgaaagaa 29460746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 29471518 - 29471598
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||||| |||||| ||| |||||||||||   |||||||||||| |||||||||||||||||    
T  29471518 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggcaaaaacattgaaagaa 29471598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 34750083 - 34750003
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  34750083 ttatacatgaaccaccttaggtggcatacacccttttacacccacacatatttgtgacacgtggcaaaaacattgaaagaa 34750003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 43999995 - 44000075
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||| | |||||||||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  43999995 ttatacatgaaccaccttaggtgtcatacacctttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaa 44000075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 46112129 - 46112049
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| ||||||||||||| | |||||| ||| ||| ||||||| | |||||||||||| |||||||||||||||||    
T  46112129 ttatacatgaaccatcttaggtgacatacaccattttacatccacacacatttgtgacatgtggcaaaaacattgaaagaa 46112049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 21559567 - 21559647
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||  ||||||||||||||| |||||| ||| ||||||||||| | |||||||| ||| |||||| ||||||||||    
T  21559567 ttatacataaaccatcttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaatattgaaagaa 21559647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 36749412 - 36749492
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| ||||| || | |||||||||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  36749412 ttatacatgaaccaccttagatgtcatacacctttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaa 36749492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 53638157 - 53638244
Alignment:
Q  149 ttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataaga-ggggtgatgatgt 235  Q
    ||||||||| |||||| ||||||||||||||| ||| ||||||||||  |||||||| |||||||  ||| ||| |||||||||||||    
T  53638157 ttaggtggcatacaccctttaacacccacacacaatcgtgacatgtggtaaaaacatggaaagaagagatgagagggggtgatgatgt 53638244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 20856334 - 20856259
Alignment:
Q  135 atacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaa 210  Q
    ||||||| ||||  ||||||||| |||||| ||| ||||||| ||| | |||||||||||| ||||||||||||||    
T  20856334 atacatgaaccactttaggtggcatacacccttttacacccatacacatttgtgacatgtggcaaaaacattgaaa 20856259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 30735680 - 30735600
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||| ||| |||| ||||| |||| |||||| ||| ||||||||||| |  ||||||| ||| |||||||||||||||||    
T  30735680 ttatatatgaaccaccttagatggcatacacccttttacacccacacacatctgtgacacgtggcaaaaacattgaaagaa 30735600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 48200703 - 48200771
Alignment:
Q  145 catcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||||||| |||||||||| ||| ||||| | | |||||||| ||| |||||| ||||||||||    
T  48200703 catcttaggtggcatacacctttttacatccacatatatttgtgacacgtggcaaaaatattgaaagaa 48200771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 39467260 - 39467206
Alignment:
Q  159 tacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    |||||| ||| ||||||||||| | |||||||||||| |||||| ||||||||||    
T  39467260 tacacccttttacacccacacatatttgtgacatgtgccaaaaatattgaaagaa 39467206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 51339966 - 51339888
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||  |||| |||||||||| |||| | ||| |||||||||||   |||||||| ||| |||||||||||||||||    
T  51339966 ttatacataaaccaccttaggtggcatacatccttttacacccacacat--ttgtgacacgtggcaaaaacattgaaagaa 51339888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 33732575 - 33732655
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||    
T  33732575 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaa 33732655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 36315567 - 36315647
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||    
T  36315567 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaa 36315647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 44958119 - 44958199
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||    
T  44958119 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaa 44958199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 16089828 - 16089908
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||| ||||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  16089828 ttatacatgaaccaccttaagtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaa 16089908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 37914421 - 37914341
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||  |||| |||||||||| |||||| ||| ||| ||||||| | |||||||||||| |||||||||||||||||    
T  37914421 ttatacataaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggcaaaaacattgaaagaa 37914341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 3831080 - 3831002
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||| | |||||| ||| ||||||||||  | |||||||| ||| |||||||||||||||||    
T  3831080 ttatacatgaaccaccttaggtgacatacacccttttacacccacac--atttgtgacacgtggcaaaaacattgaaagaa 3831002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 24137238 - 24137197
Alignment:
Q  172 acccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| | ||||||||||||||||||||||||||||||    
T  24137238 acccacacacatttgtgacatgtgacaaaaacattgaaagaa 24137197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 37499040 - 37498970
Alignment:
Q  143 accatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    |||||||||  |||| |||| | ||| |||| |||||| | |||||||||||| |||||||||||||||||    
T  37499040 accatcttaactggcatacatccttttacactcacacacatttgtgacatgtggcaaaaacattgaaagaa 37498970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 14573001 - 14573081
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||  |||| |||||||||| | |||| ||| ||| ||||||| | |||||||| ||  |||||||||||||||||    
T  14573001 ttatacataaaccaccttaggtggcatccacccttttacatccacacacatttgtgacacgtagcaaaaacattgaaagaa 14573081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 48275251 - 48275343
Alignment:
Q  16 aagaatgagggtgtaatggaaactaataaagattgatctaaatcttg--------aatataaaat-aaaaaaccctgataaatctcctctagg 99  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||        |||||||||| |||||||||| ||||||||||||||||    
T  48275251 aagaatgagggtggaatggaaactaataaagattgatctaaatcttgtatattgaaatataaaataaaaaaacccttataaatctcctctagg 48275343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 10146972 - 10147049
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaa 210  Q
    |||||||||||||| |||||||||| |||||| ||| || |||||||| |||||||||||||| |||||||| |||||    
T  10146972 ttatacatggaccaccttaggtggcatacaccctttgacccccacacacaattgtgacatgtggcaaaaacagtgaaa 10147049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 39250048 - 39249968
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| ||||||||||||||| |||||| ||| ||||||| ||| | |||||||| ||| |||||||||||||||||    
T  39250048 ttatacatgaaccatcttaggtggcatacacccttttacacccatacacatttgtgacacgtggcaaaaacattgaaagaa 39249968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 19258857 - 19258780
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaa 210  Q
    ||||||||  ||||||| ||||||| |||||||||| ||||||||| | | |||||||||||| ||||||||||||||    
T  19258857 ttatacataaaccatctaaggtggcatacacctttttacacccacatatatttgtgacatgtggcaaaaacattgaaa 19258780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 9643036 - 9642971
Alignment:
Q  148 cttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||| |||| || ||||||||||||||||||| ||||||||||  ||||||||||| ||||||||    
T  9643036 cttagatggcatataccttttaacacccacacataattgtgacacatgacaaaaacaatgaaagaa 9642971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 2509030 - 2509110
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||| | |||| | ||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  2509030 ttatacatgaaccaccttaggtgacatacatccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaa 2509110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 34307323 - 34307243
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||  |||| |||||||||| |||||| ||| ||| ||||||| | |||||||| ||| |||||||||||||||||    
T  34307323 ttatacataaaccaccttaggtggcatacacccttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaa 34307243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 28647359 - 28647439
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| || |||| || |||| ||||| ||||||||||| | |||||| || || |||||||||||||||||    
T  28647359 ttatacatgaaccacctaaggttgcatacatctttttacacccacacatatttgtgatatttggcaaaaacattgaaagaa 28647439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 8848989 - 8848961
Alignment:
Q  182 aattgtgacatgtgacaaaaacattgaaa 210  Q
    |||||||||||||||||||||||||||||    
T  8848989 aattgtgacatgtgacaaaaacattgaaa 8848961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 29099863 - 29099899
Alignment:
Q  174 ccacacagaattgtgacatgtgacaaaaacattgaaa 210  Q
    ||||||| | |||||||||||||||||||||||||||    
T  29099863 ccacacacatttgtgacatgtgacaaaaacattgaaa 29099899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 19596253 - 19596172
Alignment:
Q  132 gttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    |||||||||| |||| |||||||||| |||||||||| ||| |||| || | |||||||||||| |||||||||||||||||    
T  19596253 gttatacatgaaccaccttaggtggcatacacctttttacatccacgcacatttgtgacatgtggcaaaaacattgaaagaa 19596172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 13347134 - 13347214
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  13347134 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaa 13347214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 1815801 - 1815700
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggat-aagaggggtgatg 231  Q
    ||||||||| ||||||||||||| | |||||| ||| ||| ||||||| | |||||||| ||| |||||||||||||||||  ||| || ||||||||||    
T  1815801 ttatacatgaaccatcttaggtgacatacacccttttacatccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaggggtgatg 1815702  T
Q  232 at 233  Q
    ||    
T  1815701 at 1815700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 2237282 - 2237362
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||| | |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  2237282 ttatacatgaaccaccttaggtgacatacacccttttacacccacacatatttgtgacacgtggcaaaaacattgaaagaa 2237362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 27553558 - 27553478
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| ||||| ||||||||| || ||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  27553558 ttatacatgaaccattttaggtggcatataccattttacacccacacacatttgtgacacgtggcaaaaacattgaaagaa 27553478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 39370933 - 39371013
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| ||||| |||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  39370933 ttatacatgaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtgccaaaaacattgaaagaa 39371013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 17225325 - 17225403
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| ||||  ||||||||| ||| | |||  ||||||||||| | ||||||||||||||||||||||||||||||    
T  17225325 ttatacatgaaccactttaggtggcatactctttt--acacccacacacatttgtgacatgtgacaaaaacattgaaagaa 17225403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 33404621 - 33404541
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||| | |||||  ||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  33404621 ttatacatgaaccaccttaggtgccatacacacttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaa 33404541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 40888127 - 40888047
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||  |||| |||||||||| |||||  ||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  40888127 ttatacataaaccaccttaggtggcatacactcttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaa 40888047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 14831555 - 14831630
Alignment:
Q  138 catggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    |||| |||| |||||||||| |||||| ||| ||||||||||| | |||||| | ||| |||||||||||||||||    
T  14831555 catgaaccaccttaggtggcatacacccttttacacccacacacatttgtgatacgtggcaaaaacattgaaagaa 14831630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 3725731 - 3725800
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaa 202  Q
    |||||||||||||| |||||||||| || ||  ||||||| ||||||| || ||||||||||| ||||||    
T  3725731 ttatacatggaccaccttaggtggcatatactctttaacaaccacacataagtgtgacatgtgccaaaaa 3725800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 19124655 - 19124583
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacatt 206  Q
    |||||||||||| ||||||| |||| ||||| ||| | |||||||||| ||||||||| |||| ||||||||||    
T  19124655 ttatacatggactatcttagatggcatacacatttga-cacccacacacaattgtgacgtgtggcaaaaacatt 19124583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 12164257 - 12164337
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||||||||||||||  |||   ||||| || |||||| | ||||| |||||| |||||||||||||||||    
T  12164257 ttatacatgaaccatcttaggtggcacacattctttaatactcacacacagttgtggcatgtggcaaaaacattgaaagaa 12164337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 4300728 - 4300651
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaa 210  Q
    ||||||||| ||||| ||||||| | || | | ||| ||||||||||| | ||||||||| || ||||||||||||||    
T  4300728 ttatacatgaaccattttaggtgacatatatccttttacacccacacatatttgtgacatatggcaaaaacattgaaa 4300651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 9408224 - 9408144
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| || ||||| | ||| || ||| |||| |||||| | |||||||| ||| |||||||||||||||||    
T  9408224 ttatacatgaaccacctcaggtgacatacgcccttttacactcacacacatttgtgacacgtggcaaaaacattgaaagaa 9408144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 6724 - 6804
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  6724 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaa 6804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 3987090 - 3987010
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||||| |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  3987090 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaa 3987010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 14022940 - 14023020
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||  |||| |||||||||| |||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||    
T  14022940 ttatacataaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaa 14023020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 3118232 - 3118152
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||| ||| |||| |||||||||| |||||| ||| |||| |||||| | |||||||| ||| |||||||||||||||||    
T  3118232 ttatatatgaaccaccttaggtggcatacacccttttacactcacacacatttgtgacacgtggcaaaaacattgaaagaa 3118152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 24208449 - 24208530
Alignment:
Q  132 gttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    |||||||||  |||||| |||||||  |||||  ||| ||||||||||| | |||||| ||||| |||||||||||||||||    
T  24208449 gttatacataaaccatcataggtggtatacactattttacacccacacacatttgtgatatgtggcaaaaacattgaaagaa 24208530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 33726016 - 33726097
Alignment:
Q  132 gttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    |||||||||  ||||  ||||||||| |||||||||| ||||||||| | | |||||||||||| |||||||||||||||||    
T  33726016 gttatacataaaccactttaggtggcatacacctttttacacccacaaacatttgtgacatgtggcaaaaacattgaaagaa 33726097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 31632 - 31552
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||| ||| |||||||||||| || |||||  ||| ||||||||| | |||||||||||||| |||||||||||||||||    
T  31632 ttatatatgtaccatcttaggtagcatacacactttgacacccacatacaattgtgacatgtggcaaaaacattgaaagaa 31552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 12665350 - 12665430
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||||| |||||| ||| |||| |||||| | |||| ||||||| |||||||||||||||||    
T  12665350 ttatacatgaaccaccttaggtggcatacacccttttacactcacacacatttgtaacatgtggcaaaaacattgaaagaa 12665430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 36189222 - 36189302
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| ||||||||||||||| |||||| ||| ||||||||| | | |||||||| ||| |||||| ||||||||||    
T  36189222 ttatacatgaaccatcttaggtggcatacacccttttacacccacatacatttgtgacacgtggcaaaaatattgaaagaa 36189302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 38845165 - 38845105
Alignment:
Q  175 cacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggggtgatgatgt 235  Q
    |||||| ||||||||||||||  ||||| ||||||||||| ||||||||||||||||||||    
T  38845165 cacacacaattgtgacatgtggaaaaaatattgaaagaaaagataagaggggtgatgatgt 38845105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 42162604 - 42162684
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||| | |||||| ||| ||||||| ||| | |||||||| |||||||||||||||||||||    
T  42162604 ttatacatgaaccaccttaggtgtcatacacccttttacacccaaacacatttgtgacacgtgacaaaaacattgaaagaa 42162684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 44081786 - 44081866
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| ||||||||||||||| |||||| ||| ||||||||||| | |||| ||| |||  ||||||||||||||||    
T  44081786 ttatacatgaaccatcttaggtggcatacacccttttacacccacacacatttgtaacacgtggaaaaaacattgaaagaa 44081866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 30432345 - 30432446
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggat-aagaggggtgatg 231  Q
    ||||||||| |||| ||||| |||| |||||| ||| | ||||||||| | |||||||| ||| |||||||||||||||||  ||| || ||||||||||    
T  30432345 ttatacatgaaccaccttagatggcatacacccttttatacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaggggtgatg 30432444  T
Q  232 at 233  Q
    ||    
T  30432445 at 30432446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 31318811 - 31318891
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||||| || | ||||| ||| ||||||| | |||||||| ||| |||||||||||||||||    
T  31318811 ttatacatgaaccaccttaggtggcatataactttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaa 31318891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 42668951 - 42668886
Alignment:
Q  148 cttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    |||||||||| |||||  ||| ||||||||||| |||||||||| ||| |||||||||| ||||||    
T  42668951 cttaggtggcatacacactttgacacccacacacaattgtgacacgtggcaaaaacattaaaagaa 42668886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 87348 - 87269
Alignment:
Q  133 ttatacatggaccatcttaggtggcgtacaccttttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 213  Q
    ||||||||| |||| |||||||||| |||||| ||  ||||| ||||| | |||||||| ||| |||||||||||||||||    
T  87348 ttatacatgaaccaccttaggtggcatacacccttgtacacc-acacacatttgtgacacgtggcaaaaacattgaaagaa 87269  T

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