View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_108 (Length: 241)
Name: NF1590_low_108
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_108 |
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| [»] scaffold0050 (1 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 41360986 - 41360763
Alignment:
| Q |
1 |
ttgattgaaggtgttccagtgtccgacacatgcagttacattgaactatgttattttctcaaattaatatcagtgtccacatgtccgtattgtatgtgtc |
100 |
Q |
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| T |
41360986 |
ttgattgaaggtgttccagtgtccgacacatacagttacattgaattatgttattttctcaaattaatatcagtgtccacatgtccgtattgtatgtgtc |
41360887 |
T |
|
| Q |
101 |
cgtgcttcatagttgaaacaagcttagttaacataatttaatttgatttctaatacaaaaattgaaacaagaaataggtaccttaaggccaagtagttta |
200 |
Q |
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| T |
41360886 |
cgtgcttcatagttgaaacaggcttagttaacataatttaatttgatttctaatacaaaaattgaaacaagaaataggtaccttaaggccaagtagttta |
41360787 |
T |
|
| Q |
201 |
atgggagtaacttgaccaggtatg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
41360786 |
atgggagtaacttgaccaggtatg |
41360763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 38134424 - 38134474
Alignment:
| Q |
36 |
ttacattgaactatgttattttctcaaattaatatcagtgtccacatgtcc |
86 |
Q |
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| T |
38134424 |
ttacattgaattatgtcattttctcaaattattatcggtgtcaacatgtcc |
38134474 |
T |
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Target: scaffold0050 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 43705 - 43667
Alignment:
| Q |
180 |
accttaaggccaagtagtttaatgggagtaacttgacca |
218 |
Q |
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| T |
43705 |
accttaaggccaagtaatttaatgggagtaacttgacca |
43667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 5654609 - 5654658
Alignment:
| Q |
36 |
ttacattgaactatgttattttctcaaattaatatcagtgtccacatgtc |
85 |
Q |
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|||||||||| ||||| |||||||||||||| |||||||||| ||||||| |
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| T |
5654609 |
ttacattgaattatgtcattttctcaaattattatcagtgtcgacatgtc |
5654658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 10546189 - 10546140
Alignment:
| Q |
36 |
ttacattgaactatgttattttctcaaattaatatcagtgtccacatgtc |
85 |
Q |
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|||||||||| ||||| |||||||||||||| ||||| |||| ||||||| |
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| T |
10546189 |
ttacattgaattatgtcattttctcaaattattatcattgtcgacatgtc |
10546140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 99934 - 99882
Alignment:
| Q |
36 |
ttacattgaactatgttattttctcaaattaatatcagtgtccacatgtccgt |
88 |
Q |
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| T |
99934 |
ttacattgaattatgttattttctaaaattattatcggtgtcgacatgtccgt |
99882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 44605144 - 44605187
Alignment:
| Q |
23 |
ccgacacatgcagttacattgaactatgttattttctcaaatta |
66 |
Q |
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|||||||||| | |||||||||| |||||||||||||||||||| |
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| T |
44605144 |
ccgacacatgtaattacattgaattatgttattttctcaaatta |
44605187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 22131259 - 22131313
Alignment:
| Q |
23 |
ccgacacatgcagttacattgaactatgttattttctcaaattaatatcagtgtc |
77 |
Q |
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| T |
22131259 |
ccgacacatgtgattacattgaacaatgtcattttctcaaattactatcagtgtc |
22131313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 40682034 - 40681980
Alignment:
| Q |
25 |
gacacatgcagttacattgaactatgttattttctcaaattaatatcagtgtcca |
79 |
Q |
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||||| |||| |||||||||| ||||| |||||||||||||| |||| ||||||| |
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| T |
40682034 |
gacacgtgcaattacattgaattatgtcattttctcaaattattatcggtgtcca |
40681980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 19613631 - 19613672
Alignment:
| Q |
36 |
ttacattgaactatgttattttctcaaattaatatcagtgtc |
77 |
Q |
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|||||||||| |||||||||||||||||||| ||| |||||| |
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| T |
19613631 |
ttacattgaattatgttattttctcaaattattatgagtgtc |
19613672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 3508093 - 3508056
Alignment:
| Q |
36 |
ttacattgaactatgttattttctcaaattaatatcag |
73 |
Q |
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|||||||||| |||||||||||||||||||| |||||| |
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| T |
3508093 |
ttacattgaattatgttattttctcaaattattatcag |
3508056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 8798824 - 8798889
Alignment:
| Q |
11 |
gtgttccagtgtccgacacatgcagttacattgaactatgttattttctcaaattaatatcagtgt |
76 |
Q |
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||||||| ||||| ||||||| | ||| |||||| |||||||||||||||||||| || |||||| |
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| T |
8798824 |
gtgttccggtgtcggacacatataattatattgaattatgttattttctcaaattattaacagtgt |
8798889 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 28590914 - 28590866
Alignment:
| Q |
36 |
ttacattgaactatgttattttctcaaattaatatcagtgtccacatgt |
84 |
Q |
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||||||| |||| |||||||||||||||||| |||| ||||| |||||| |
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| T |
28590914 |
ttacattcaactttgttattttctcaaattattatcggtgtcaacatgt |
28590866 |
T |
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