View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_11 (Length: 525)
Name: NF1590_low_11
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 25899656 - 25899142
Alignment:
| Q |
1 |
cttcaatcaaaatacgacggctcatggcggaaaatgtggctcttacggccaaggttgcgatttgacggtaagcacaaccatctcttattgcatagcctta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
25899656 |
cttcaatcaaaatacgacggctcatggcggaaaatgtggctcttacggccaaggttgcgatttgatggtaagcacaactatctcttattgcatagcctta |
25899557 |
T |
|
| Q |
101 |
tttcctgatcttcatattgatt----agtgacctgtgatggttaagtttttttatcgccannnnnnnnnnnnnnn---gcatactaatttccctagattg |
193 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25899556 |
tttcctgatcttcatattgattgattagtgacctgtgatggttaagtttttttatcgccatggtttttttttttttttgcatactaatttccctagattg |
25899457 |
T |
|
| Q |
194 |
tgtgattgtgaaaggttaaacttgaaatgagaatgggcaaggtcctgatacattgatttgcttcaatccttctgtcgatcttaaggacatgatgatatct |
293 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25899456 |
tgtgattatgaaaggttaaacttgaaatgagaatgggcaaggtcctgatacattgatttgcttcaatccttctgtcgatcttaaggacatgatgatatct |
25899357 |
T |
|
| Q |
294 |
attgcctattggtatgtaataaatatttcacattaatttgcagtctgttcaagggaacataaatatttcctcttactaattgatcattctaggaagtaat |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25899356 |
attgcctattggtatgtaataaatatttcacattaatttgcagtctgttcaagggaacataaatatttcctcttactaatttatcattctaggaagtaat |
25899257 |
T |
|
| Q |
394 |
tgaggtatataataaatattagaataataggaatctcataatattaggacataggaattttgttagattagtagtcttattttctaaaaattatccaaga |
493 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25899256 |
tgaggtatataataaatattagaataataggactctcataatattaggacataggaattttgttagattagtagtcttattttctaaaaattatccaaga |
25899157 |
T |
|
| Q |
494 |
ctgaagctcaaaaga |
508 |
Q |
| |
|
||||||||||||||| |
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|
| T |
25899156 |
ctgaagctcaaaaga |
25899142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 356 - 468
Target Start/End: Original strand, 34810321 - 34810433
Alignment:
| Q |
356 |
atatttcctcttactaattgatcattctaggaagtaattgaggtatataataaatattagaataataggaatctcataatattaggacataggaattttg |
455 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||||||||||||||||||||| ||| |||| ||||| |||||| || | || |||||||||| ||| |
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| T |
34810321 |
atatttcctcttcctaatttgccattcctggaagtaattgaggtatataataaatgttaaaatattaggattctcattatttcagaacataggaatgttg |
34810420 |
T |
|
| Q |
456 |
ttagattagtagt |
468 |
Q |
| |
|
|||| |||||||| |
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|
| T |
34810421 |
ttaggttagtagt |
34810433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 37616781 - 37616724
Alignment:
| Q |
172 |
gcatactaatttccctagattgtgtgattgtgaaaggttaaacttgaaatgagaatgg |
229 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
37616781 |
gcatactattttccctagattgtgtgattatggaaggttaaacttgaaatgagaatgg |
37616724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 40068606 - 40068753
Alignment:
| Q |
1 |
cttcaatcaaaatacgacggctcatggcggaaaatgtggctcttacggccaaggttgcgatttgacggtaagcacaaccatctcttattgcatagcctta |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||| |||| ||||| |
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|
| T |
40068606 |
cttcaatcaaaatacgatggctcatggcggaaaatgtggctcttacggccaaggttgcgatttgatggtaagcacagctatctcttatttcataacctta |
40068705 |
T |
|
| Q |
101 |
tttcctgatcttcatattgattagtgacctgtgatggttaagtttttt |
148 |
Q |
| |
|
||||||| || ||||||||||| |||||| |||||||||||||||||| |
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|
| T |
40068706 |
tttcctgctcctcatattgattggtgaccggtgatggttaagtttttt |
40068753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 172 - 297
Target Start/End: Original strand, 29200018 - 29200142
Alignment:
| Q |
172 |
gcatactaatttccctagattgtgtgattgtgaaaggttaaacttgaaatgagaatgggcaaggtcctgatacattgatttgcttcaatccttctgtcga |
271 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| |||||||||| |
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| T |
29200018 |
gcatactaatttccctagattgtgtgattatgaaaggttaaacctgaaatgagaatga-caaggtcctgatacattgattttcttcaatgcttctgtcga |
29200116 |
T |
|
| Q |
272 |
tcttaaggacatgatgatatctattg |
297 |
Q |
| |
|
|||||||||||||||| ||||||||| |
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|
| T |
29200117 |
tcttaaggacatgatgttatctattg |
29200142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 19768506 - 19768563
Alignment:
| Q |
172 |
gcatactaatttccctagattgtgtgattgtgaaaggttaaacttgaaatgagaatgg |
229 |
Q |
| |
|
|||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||| |
|
|
| T |
19768506 |
gcatactattttccctagattgtttgattatggaaggttaaacttgaaatgagaatgg |
19768563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 403 - 483
Target Start/End: Complemental strand, 16488786 - 16488706
Alignment:
| Q |
403 |
taataaatattagaataataggaatctcataatattaggacataggaattttgttagattagtagtcttattttctaaaaa |
483 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||| |
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|
| T |
16488786 |
taataaatattagaataatagtactctcataatattaggacataggaattttgtttgatcagtagtcttattttgtaaaaa |
16488706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 403 - 483
Target Start/End: Original strand, 21814124 - 21814204
Alignment:
| Q |
403 |
taataaatattagaataataggaatctcataatattaggacataggaattttgttagattagtagtcttattttctaaaaa |
483 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||| |
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|
| T |
21814124 |
taataaatattagaataatagtactctcataatattaggacataggaattttgtttgatcagtagtcttattttgtaaaaa |
21814204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 508
Target Start/End: Complemental strand, 37726589 - 37726530
Alignment:
| Q |
448 |
gaattttgttagattagtagtcttattttctaaaaattatccaagactgaagctcaaaaga |
508 |
Q |
| |
|
|||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
37726589 |
gaattttgttaggttagtt-tcttatttttgaaaaattatccaagactgaagctcaaaaga |
37726530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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