View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_114 (Length: 238)
Name: NF1590_low_114
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_114 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 102 - 238
Target Start/End: Complemental strand, 3701900 - 3701766
Alignment:
| Q |
102 |
aattcaacagaattaacaataatatacaacnnnnnnntacactacttgaaatttgcaaaaataaaaagaaggagctcaggggtatggtattcatccaatg |
201 |
Q |
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| T |
3701900 |
aattcaacagaattaacaataatatacaacaaaaaaatacacgacttgaaatttgcaaaaataaaaa--aggagctcaggggtatggtattcatccaatg |
3701803 |
T |
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| Q |
202 |
tttcaggagaagtgatgttaccgaacaccacaaatat |
238 |
Q |
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| T |
3701802 |
tttcaggagaagtgatgttaccgaacaccacagatat |
3701766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 3713146 - 3713066
Alignment:
| Q |
158 |
aaaaataaaaagaaggagctcaggggtatggtattcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatat |
238 |
Q |
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| T |
3713146 |
aaaaataaaaagaaagagctcagaggcattattttcatccaatgtttcaggagaagtgatgttaccgaacaccacagatat |
3713066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 3705589 - 3705516
Alignment:
| Q |
165 |
aaaagaaggagctcaggggtatggtattcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatat |
238 |
Q |
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| T |
3705589 |
aaaagaaagagctcagaggtattattttcatccaatgtttcaggagaagtgatgttaccgaacaacacatatat |
3705516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 3701952 - 3701904
Alignment:
| Q |
16 |
cacaagggatgactcgaaaacaggacatgctccttcttttgaacagtta |
64 |
Q |
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| T |
3701952 |
cacaagggatgactcgaaaacaggacatgcttcttcttttgaacagtta |
3701904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 3713350 - 3713301
Alignment:
| Q |
30 |
cgaaaacaggacatgctccttcttttgaacagttaacagacttcaataaa |
79 |
Q |
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| T |
3713350 |
cgaaaacaggacatgcttcttcttttgaccagttaacggacttcaataaa |
3713301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 3708102 - 3708022
Alignment:
| Q |
158 |
aaaaataaaaagaaggagctcaggggtatggtattcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatat |
238 |
Q |
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| T |
3708102 |
aaaaaaaaaaaaaaggagctcagaggtattattttcatccgatgattcaggaaaggtaatgttaccaaacatcacaaatat |
3708022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 3719661 - 3719605
Alignment:
| Q |
164 |
aaaaagaaggagctcaggggtatggtattcatccaatgtttcaggagaagtgatgtt |
220 |
Q |
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| T |
3719661 |
aaaaagatggagctcagaggtatgtttttcatcctatgtttcaggaggaatgatgtt |
3719605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 12482994 - 12483069
Alignment:
| Q |
158 |
aaaaataaaaagaaggagctcaggggtatggtat-tcatccaatgtttcaggagaagtgatgttaccgaacaccaca |
233 |
Q |
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| T |
12482994 |
aaaaaaaaaaagaaggagctcaggggtat-atatgtcatccagtatttcaggataagtgatgttacctaacatcaca |
12483069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 2106006 - 2105959
Alignment:
| Q |
191 |
ttcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatat |
238 |
Q |
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| T |
2106006 |
ttcatccaatggttcaggataggtgatgttaccgaacatcacaaatat |
2105959 |
T |
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