View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_118 (Length: 238)
Name: NF1590_low_118
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_118 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 7 - 212
Target Start/End: Original strand, 50637445 - 50637651
Alignment:
| Q |
7 |
gtaatagaaatgtgttcatcataatggcgggtgtttctcttattaacatcgcactaaatagacacactcattcaaatgtgagatgtattatggtatattt |
106 |
Q |
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| T |
50637445 |
gtaatagaaacatgttcatcataatggtgggtgtttctcttattaacattgcactaaatagacacactcatctaaatgtgagatgtattatggtatcttt |
50637544 |
T |
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| Q |
107 |
ttatgt-aatttaattttagtgggtggagccactgttcccatgggctccttaaagagtttcaccactagtaaatagaaatttgttcatcataatggtggg |
205 |
Q |
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| T |
50637545 |
ctatgttaatttaattttagtgggtggagccactgctcccatgggctccttaaagagttttgccactagtaaatagatatttgttcatcataatggtgag |
50637644 |
T |
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| Q |
206 |
tgcttct |
212 |
Q |
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| T |
50637645 |
tggttct |
50637651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 225
Target Start/End: Original strand, 50637370 - 50637495
Alignment:
| Q |
99 |
gtatatttttatgtaatttaattttagtgggtggagccactgttcccatgggctccttaaagagtttcaccactagtaaatagaaatttgttcatcataa |
198 |
Q |
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| T |
50637370 |
gtatatttctatgtaatttaatttaatttagtggggggactactcctatgggctccttaaagagttttgccactagtaa-tagaaacatgttcatcataa |
50637468 |
T |
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| Q |
199 |
tggtgggtgcttctcttattaacattg |
225 |
Q |
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| T |
50637469 |
tggtgggtgtttctcttattaacattg |
50637495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 50637616 - 50637682
Alignment:
| Q |
9 |
aatagaaatgtgttcatcataatggcgggtgtttctcttattaacatcgcactaaatagacacactcat |
77 |
Q |
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| T |
50637616 |
aatagatatttgttcatcataatggtgagtggttct--tattaacatcacactaaatagacacactcat |
50637682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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