View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_12 (Length: 515)
Name: NF1590_low_12
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 12 - 498
Target Start/End: Original strand, 42336228 - 42336716
Alignment:
| Q |
12 |
gagatgaaagtggcgatggtgaaggtgcatgtgagggagggttggaaggagatggggccggtgaagtgctagcgggggctggtgttggagatgaaaatgg |
111 |
Q |
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| T |
42336228 |
gagatgaaagtggcgatggtgaaggtgcatgtgagggagggttggaaggagatggggccggtgaagtgctagcgggggctggtgttggagatgaaaatgg |
42336327 |
T |
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| Q |
112 |
ggccggtgaaggcgcgttagggttaggagatggggctggtgatgtgggagatgaagctggagaagacccagcaggggctggtgccggtgaaggcgactgg |
211 |
Q |
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| T |
42336328 |
ggccggtgaaggcgcattagggttaggagatggggttggtgatgtgggagatgaagctggagaagaaccagcgggggctggtgccggtgaaggcgactgg |
42336427 |
T |
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| Q |
212 |
cctccgacaccggcgataacaatgcagatgaatgcaagagagaacacaatgttgagattcattttgaaaattgaaaacaaggtgnnnnnnnnnnnngttt |
311 |
Q |
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| T |
42336428 |
cctacgacaccggcgataacaatgcagatgaatgcaagagagaacacaatgttgagattcattttgaaaattgaaaacaaggtgtttttcttttttgttt |
42336527 |
T |
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| Q |
312 |
gctagggttgcaatgtgatgataaaaggcttatacttgatagtat--tatataggactttgttcttatttgatttcacgctgatgatgctatttttggaa |
409 |
Q |
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| T |
42336528 |
gctagggttgcaatgtgatgatgaaaggcttatacttgatagtattatatataggactttgctcttatttgatttcacgctgatgatgctatttttggaa |
42336627 |
T |
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| Q |
410 |
caaaaaggaaattttcccattactcggtaccacagattgggaacaattcttaaatgttttaaccgcgtacggtttgctccatttattaa |
498 |
Q |
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| T |
42336628 |
caaaaaggaaattttcccattactcggtaccacagattgggaacaattcttaaatgttttaaccgcgtacggtttgctccatttattaa |
42336716 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 19792394 - 19792346
Alignment:
| Q |
209 |
tggcctccgacaccggcgataacaatgcagatgaatgcaagagagaaca |
257 |
Q |
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||||||| |||| |||||| |||||||||||||| ||||| |||||||| |
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| T |
19792394 |
tggcctctgacagcggcgacaacaatgcagatgagtgcaaaagagaaca |
19792346 |
T |
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