View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_120 (Length: 237)
Name: NF1590_low_120
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_120 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 2018493 - 2018286
Alignment:
| Q |
18 |
agaattgcatctatagaacaaacaaaagaaatcttcaatgaaggttgtcaagttatggattggttattcatttcttaattttcttttgaaatgcaacgac |
117 |
Q |
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| T |
2018493 |
agaattgcatctatagaacaaacaaaagaaatcttcaatgaaggttgtcaagatatggatcggttattcatttcttaattttcttttgaaatgcaacgac |
2018394 |
T |
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| Q |
118 |
aggtaaaaatattatttaaataacctcagtgatacagtattgacactgaatcttacattttgttgacaattctttggcgttgatcaggttgcagttgggt |
217 |
Q |
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| T |
2018393 |
aggtaaaaatactatttaaataacctc--tgatacaatattgatactgaatcttacattttattgacaattctttggcgttgatcaggttgcagttgagt |
2018296 |
T |
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| Q |
218 |
tctccaatca |
227 |
Q |
| |
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|||||||||| |
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| T |
2018295 |
tctccaatca |
2018286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 2021052 - 2020842
Alignment:
| Q |
18 |
agaattgcatctatagaacaaacaaaagaaatcttcaatgaaggttgtcaagttatggattggttattcatttcttaattttcttttgaaatgcaacgac |
117 |
Q |
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| T |
2021052 |
agaattgcatctatagaacaaacaaaagaaatcttcaataaaggttctcaatttatggattgattattcatttcttaattttcttttgaaatgca---ac |
2020956 |
T |
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| Q |
118 |
aggtaaaaatattatttaaataacctcagtgatacagtattgacactgaatcttacattttgttgacaattctttggcgttgatcaggttgcagttgggt |
217 |
Q |
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| T |
2020955 |
atgtaaaaatactatttaaataacctc--tgacacagtattgacaccaaatcttacatattattgacaattctttggcgttgatcaggttgcagttgagt |
2020858 |
T |
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| Q |
218 |
tctccaatcagttgtg |
233 |
Q |
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| T |
2020857 |
tctccaatcaattgtg |
2020842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 1989351 - 1989175
Alignment:
| Q |
58 |
aaggttgtcaa-gttatggattggttattcatttcttaattttcttttgaaatgcaacgacaggtaaaaatattatttaaataacctcagtgatacagta |
156 |
Q |
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||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||| |||| ||| ||| |||||||||||||||||||||| |||| |
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| T |
1989351 |
aaggttgtcaaagttatggattgattattaatttcttaattttcttttcaaatgcaacaacagctaacaatgctatttaaataacctcagtgataaagta |
1989252 |
T |
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| Q |
157 |
ttgacactgaatcttacattttgttgacaattctttggcgttgatcaggttgcagttgggttctccaatcagttgtg |
233 |
Q |
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| T |
1989251 |
ctgacactgaatcttacattttgttgacgattctatggcgttgatcaggttgtatttgagttctccaatcacttgtg |
1989175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 2035751 - 2035675
Alignment:
| Q |
151 |
acagtattgacactgaatcttacattttgttgacaattctttggcgttgatcaggttgcagttgggttctccaatca |
227 |
Q |
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| T |
2035751 |
acagtattgaaactgaatcttacattttattgacaattctttggcgttgatcaggttgcagttgagttctccaatca |
2035675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 44969352 - 44969406
Alignment:
| Q |
143 |
tcagtgatacagtattgacactgaatcttacattttgttgacaattctttggcgt |
197 |
Q |
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|||||||||||||| | | ||| | ||||||||||||||||||||||||||||| |
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| T |
44969352 |
tcagtgatacagtactaaaactagagcttacattttgttgacaattctttggcgt |
44969406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 197
Target Start/End: Complemental strand, 40910611 - 40910583
Alignment:
| Q |
169 |
cttacattttgttgacaattctttggcgt |
197 |
Q |
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| T |
40910611 |
cttacattttgttgacaattctttggcgt |
40910583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 44983701 - 44983729
Alignment:
| Q |
169 |
cttacattttgttgacaattctttggcgt |
197 |
Q |
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| T |
44983701 |
cttacattttgttgacaattctttggcgt |
44983729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 44999530 - 44999570
Alignment:
| Q |
153 |
agtattgacactgaatcttacattttgttgacaattctttg |
193 |
Q |
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|||||| | |||||| ||||||||||||||||||||||||| |
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| T |
44999530 |
agtattaaaactgaaacttacattttgttgacaattctttg |
44999570 |
T |
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