View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_122 (Length: 236)
Name: NF1590_low_122
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_122 |
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Alignment Details
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 29905231 - 29905309
Alignment:
| Q |
1 |
taaatctagtaattctccataagcattgtcgcttgaacttgtgttgtgtgcatactcaccaaactacttatatagagag |
79 |
Q |
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| T |
29905231 |
taaatctagtaattctccataagcattgtcgcttgaacttgtgttgtgtgcatacccaccaaactacttatatagagag |
29905309 |
T |
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Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 29905356 - 29905429
Alignment:
| Q |
113 |
aactattcccatcgtttccataataacgtaaaaatggagtctaaaacacgtggtaagtacacaaatatgaaaag |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29905356 |
aactattcccatcgtttccataataacgtaaaaatggagtctaaaacacgtggtaagtacacaaatatgaaaag |
29905429 |
T |
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