View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_124 (Length: 235)
Name: NF1590_low_124
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_124 |
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| [»] scaffold0250 (3 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 40753290 - 40753494
Alignment:
| Q |
18 |
agaagcacataaatggagaggatcctaaccctagataatgaggccaaagtatagaaatggagaaggaaaccaaatgcatacccttgtctc--actatcta |
115 |
Q |
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| T |
40753290 |
agaagcacataaatggagaggatcctaaccctagataatgaggccaaagtatagaaatggagaaggaaaccaaatgcatacccttgtctctcactatcta |
40753389 |
T |
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| Q |
116 |
tccccgaagcaagaaatacaacacacctaaaaacaattccagcaagcactcccaggtagcgcataacataaactaccaagtacctaccccatccatacaa |
215 |
Q |
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| T |
40753390 |
tccccgaagcaagaaatacaacacacctaaaaacaattccagcaagcactcccaggtagcgcataacataaactaccaagtacctaccccatccatacaa |
40753489 |
T |
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| Q |
216 |
caatg |
220 |
Q |
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||||| |
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| T |
40753490 |
caatg |
40753494 |
T |
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Target: scaffold0250 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 6489 - 6585
Alignment:
| Q |
52 |
ataatgaggccaaagtatagaaatggagaaggaaaccaaatgcatacccttgtctcactatctatccccgaagcaagaaatacaacacacctaaaaacaa |
151 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||| |||||||| |
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| T |
6489 |
ataatgaggccaaagtatacaaatggagaaggaaaccaaatgcatacccttgcctca----ctatccccaaagcaagaaattcaacacacccaaaaacaa |
6584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 6611 - 6670
Alignment:
| Q |
158 |
caagcactcccaggtagcgcataacataaactaccaagtacctaccccatccatacaaca |
217 |
Q |
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| T |
6611 |
caagcactcccaggtagcacattacataagctaccaactacctatcccaacaatacaaca |
6670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 7098 - 7064
Alignment:
| Q |
14 |
atgaagaagcacataaatggagaggatcctaaccc |
48 |
Q |
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| T |
7098 |
atgaagaaacacataaatggagaggatcctaaccc |
7064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 6552 - 6585
Alignment:
| Q |
15 |
tgaagaagcacataaatggagaggatcctaaccc |
48 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
6552 |
tgaagaaacacataaatggagaggatcctaaccc |
6585 |
T |
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