View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_125 (Length: 235)
Name: NF1590_low_125
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_125 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 8228570 - 8228793
Alignment:
| Q |
1 |
caaacaccccacaaattcaatgcacacactcaaaatgaatatctgaactaaatcta-caatactccaagacaaaaatatataaataattgaaaaga---a |
96 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
8228570 |
caaacaccccacaaattcaatacacacactcaaaatgaatatctgaactaaatctaacaatactccaagacaaaaatatataaataattgaaaagaagaa |
8228669 |
T |
|
| Q |
97 |
atttagatataaacttgagtgtataatttaacgaagaagaacttgagtgtgtgtagcattgacctccctcttccttgaacatatcaaacaaaatgagagt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8228670 |
atttagatataaacttgagtgtataatttaacgaagaagaacttgagtgtgtgtagcattgacctccctcttccttgaacatatcaaacaaaatgagagt |
8228769 |
T |
|
| Q |
197 |
tgttttaggatgtttcaatcaatt |
220 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
8228770 |
tgttttaggatgtttcaatcaatt |
8228793 |
T |
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