View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_126 (Length: 235)
Name: NF1590_low_126
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_126 |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 6903205 - 6902971
Alignment:
| Q |
1 |
ttcccctcatcatcttcaacccatatcatcttcatcaagttgttcttagaaaacccaaaaaattatcataagtctctccacactatatttcatttattaa |
100 |
Q |
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| T |
6903205 |
ttcccctcatcatcttcaacccataccatcttcatcaagttgttcttagaaaacccagaaaattatcataggtctctccacactatatttcatttattaa |
6903106 |
T |
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| Q |
101 |
ttatcatctaccttcaccaacattctcctccacttctttcctttccgagaaatcgaacacagtagttttgttttttcatcaatacaagaccacacacaca |
200 |
Q |
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| T |
6903105 |
ttatcatctaccttcaccaacattctcctccacttctttcctttccgagaaatcgaacacagtagttttgttttttcatcaatacaagaccacacacaca |
6903006 |
T |
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| Q |
201 |
gtactatacttaaaacacatcaacctcatccttgt |
235 |
Q |
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| T |
6903005 |
gtactatacttaaaacacatcaacctcatccttgt |
6902971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 23633033 - 23633267
Alignment:
| Q |
1 |
ttcccctcatcatcttcaacccatatcatcttcatcaagttgttcttagaaaacccaaaaaattatcataagtctctccacactatatttcatttattaa |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||| |
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| T |
23633033 |
ttcccctcatcatcttcaacctatatcatcttcatcaagttgttcttagaaaacccagaaaattatcataggtctctccacactataattcatttattaa |
23633132 |
T |
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| Q |
101 |
ttatcatctaccttcaccaacattctcctccacttctttcctttccgagaaatcgaacacagtagttttgttttttcatcaatacaagaccacacacaca |
200 |
Q |
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| T |
23633133 |
ttatcatctaccttcaccaatattctcctccacttcttgcctttccgagaaatcgaacacagtagttttgttttttcatcaatacaagaccacacacaga |
23633232 |
T |
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| Q |
201 |
gtactatacttaaaacacatcaacctcatccttgt |
235 |
Q |
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| T |
23633233 |
gtactatacttaaaacacatcaacctcatccttgt |
23633267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 39146901 - 39147133
Alignment:
| Q |
1 |
ttcccctcatcatcttcaacccatatcatcttcatcaagttgttcttagaaaacccaaaaaattatcataagtctctccacactatatttcatttattaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| || | ||||||||||| |||||||||||| |
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| T |
39146901 |
ttcccctcatcatcttcaacccatatcatcttcatcaagttgttcttagaaaacccagaaaatcatcataggtttttccacactataattcatttattaa |
39147000 |
T |
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| Q |
101 |
ttatcatctaccttcaccaacattctcctccacttctttcctttccgagaaatcgaacacagtagttttgttttttcatcaatacaagaccacacacaca |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
39147001 |
ttatcatctagcttcaccaacattctcctccacttcttgcctttccgagaaatcgaacacaatagttttgttttttcatcaatacaagaccacacacaga |
39147100 |
T |
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| Q |
201 |
gtactatacttaaaacacatcaacctcatcctt |
233 |
Q |
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| T |
39147101 |
gtactatacttaaaacacatcaacctcatcctt |
39147133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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