View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_127 (Length: 232)
Name: NF1590_low_127
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_127 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 6903497 - 6903278
Alignment:
| Q |
13 |
cctgtactttattaagttccatttgatgattgagtagaagggatagtgcccatgttagggttaccatggtggtgtcacttcctgctaaaatcagattctg |
112 |
Q |
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| T |
6903497 |
cctgtactttattaagttccatttgatgattgagtaggagggatagtgcccatgttagggtcaccatggtggtgtcacttcctgctaaaatcagattctg |
6903398 |
T |
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| Q |
113 |
ccaatatatatatactcaaagttagttctcaaactgaaaaggtaataatatgtactgaaaactgagattatcttctcaagcaggtggagtttaacatggg |
212 |
Q |
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| T |
6903397 |
ccaatatatatatactcaaagttagttctcaaactgaaaaggtaataatatgtactgaaaactgagattatcttctcaagcaggtggagtttaacatggg |
6903298 |
T |
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| Q |
213 |
aaaggctactccttttcccc |
232 |
Q |
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|||| ||| ||||||||||| |
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| T |
6903297 |
aaagactaatccttttcccc |
6903278 |
T |
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