View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_14 (Length: 476)
Name: NF1590_low_14
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 9 - 460
Target Start/End: Complemental strand, 3492400 - 3491949
Alignment:
| Q |
9 |
acatcatcacccttacaaggaatcttcctaacagcaatcataaattcactatcactactggaatctgaaatgttcaaattaaaaacaccttgaatcaaaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3492400 |
acatcatcacccttacaaggaatcttcctaacagcaatcataaattcactatcactactggaatctgaaatgttcaaattaaaaacaccttgaatcaaaa |
3492301 |
T |
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| Q |
109 |
ccaaaccaagctcttctgaattaatacaaacttgaagagcagcacaaagagcaacaccggcagcaacaaaacaatccctagaaaaagcatcagagcccat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3492300 |
ccaaaccaagctcttctgaattaatacaaacttgaagagcagcacaaagagcaacaccggcagcaacaaaacaatccctagaaaaagcatcagagcccat |
3492201 |
T |
|
| Q |
209 |
caaattcaaaacaacactcacaaccccctccatcacactcgagaaaccatcaactccaacaccattttcgccaccagaactaaatttcaaaggaaacttc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3492200 |
caaattcaaaacaacactcacaaccccctccatcacactcgagaaaccatcaactccaacaccattttcgccaccagaactaaatttcaaaggaaacttc |
3492101 |
T |
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| Q |
309 |
tgaagcaagtaatacaaacaagacataccctcctgacattgttccatcacaatcggtgaaggacgagacgaatcaacattcgactcggaaacaacaccat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3492100 |
tgaagcaagtaatacaaacaagacataccctcctgacattgttccatcacaatcggtgaaggacgagacgaatcaacattcgactcggaaacaacaccat |
3492001 |
T |
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| Q |
409 |
tcaaactcctaacgacatcaccagcaaccaaaacagcacaaatctcaacaac |
460 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3492000 |
tcaaactcctaacaacatcaccagcaaccaaaacagcacaaatctcaacaac |
3491949 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 23904257 - 23904351
Alignment:
| Q |
95 |
accttgaatcaaaaccaaaccaagctctt-----ctgaattaatacaaacttgaagagcagcacaaagagcaacaccggcagcaacaaaacaatcc |
185 |
Q |
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||||| ||||||||||||| ||||||| | ||||| ||| ||||||||||| | ||||||||||||||||| | |||||||||||||||||| |
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| T |
23904257 |
accttaaatcaaaaccaaatcaagctcctgtgaactgaactaacacaaacttgaaaa-cagcacaaagagcaacatcagcagcaacaaaacaatcc |
23904351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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