View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_140 (Length: 214)
Name: NF1590_low_140
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_140 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 8342234 - 8342398
Alignment:
| Q |
30 |
cataactgaaattcctcttgattattattgaaatataagtagcaatctgctagttacatttgagaacctcttcgatttat--agagtgaattggcgaggt |
127 |
Q |
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| T |
8342234 |
cataactgaaattcctcttgattattattgaaatataagtagcaatctgctagttacatttgagaacctcttcgatttatagagagtgaattggtgaggt |
8342333 |
T |
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| Q |
128 |
atcaattctatcgaaaagtgaggccggaagacagagggtgtgtctaatatgattggcctcggagt |
192 |
Q |
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| T |
8342334 |
atcaattctatcgaaaagtgaggccggaagacagagggtgtgtctgatatgattggcctcggagt |
8342398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 30 - 192
Target Start/End: Complemental strand, 3228315 - 3228152
Alignment:
| Q |
30 |
cataactgaaattcctcttgattattattgaaatataagtagcaatctgctagttacatttgagaacctcttcgatttat--agagtgaattggcgaggt |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||| |
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| T |
3228315 |
cataactgaaattcctcttgattattattgaaatataagtagcaatctgccagttacatctgggaacctcttcgatttatagagagtgaattggcgaggt |
3228216 |
T |
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| Q |
128 |
atcaattctatcgaaaagtgaggccggaagacagagggtgtgtctaatatgattggcctcggagt |
192 |
Q |
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||||||||||| ||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||| |
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| T |
3228215 |
atcaattctattgaaaagtgaggtcggaagacaga-ggtgtttctgatatgattggcctcggagt |
3228152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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