View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1590_low_142 (Length: 210)
Name: NF1590_low_142
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_142 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 6719448 - 6719627
Alignment:
| Q |
18 |
gctacaaaagagtcattctatataacctcttaatcaacctactactaattgagatccgaaagatactacttagtagtaatgctaaatatattacatggta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6719448 |
gctacaaaagagtcattctatataacctcttaatcaacctactactaattgagatccgaaagatactacttagtagtaatgctaaatatattacatggta |
6719547 |
T |
|
| Q |
118 |
ccaagggaagtggatattcatattagacatcattatctttgttagcattagaaaatatctgcatttcgcacttctctgct |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6719548 |
ccaagggaagtggatattcatattagacatcattatctttgttagcattagaaaatatctgcatttcgcacttctctgct |
6719627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University