View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_low_148 (Length: 202)

Name: NF1590_low_148
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_low_148
NF1590_low_148
[»] chr1 (1 HSPs)
chr1 (13-105)||(34580845-34580937)
[»] chr7 (7 HSPs)
chr7 (129-202)||(25443540-25443613)
chr7 (158-202)||(22205404-22205448)
chr7 (158-202)||(22229291-22229335)
chr7 (157-202)||(19928353-19928398)
chr7 (157-202)||(30947477-30947522)
chr7 (158-202)||(37245378-37245422)
chr7 (158-202)||(40820004-40820048)
[»] chr2 (6 HSPs)
chr2 (158-202)||(27709937-27709981)
chr2 (157-202)||(14314495-14314540)
chr2 (157-202)||(14811196-14811241)
chr2 (129-165)||(14314447-14314483)
chr2 (129-165)||(14811253-14811289)
chr2 (158-202)||(32751109-32751153)
[»] chr3 (7 HSPs)
chr3 (159-202)||(27391352-27391395)
chr3 (160-202)||(41530477-41530519)
chr3 (157-202)||(42864271-42864316)
chr3 (158-202)||(24645647-24645691)
chr3 (129-171)||(958807-958849)
chr3 (157-202)||(4533392-4533437)
chr3 (129-165)||(39674156-39674192)
[»] chr6 (2 HSPs)
chr6 (157-202)||(8861971-8862016)
chr6 (157-202)||(21112020-21112065)
[»] chr5 (1 HSPs)
chr5 (157-202)||(6665643-6665688)
[»] chr4 (2 HSPs)
chr4 (129-202)||(26261018-26261091)
chr4 (158-202)||(32760439-32760483)
[»] chr8 (3 HSPs)
chr8 (157-202)||(10786870-10786915)
chr8 (158-202)||(20289291-20289335)
chr8 (158-202)||(21075921-21075965)
[»] scaffold0017 (1 HSPs)
scaffold0017 (129-165)||(38114-38150)


Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 34580845 - 34580937
Alignment:
Q  13 tgaactcacggggatattccgctagacttactatcattcaatattgtacgtagatttatattataatacttgttcctattaactgcattgata 105  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34580845 tgaactcacggggatatttcgctagacttactatcattcaatattgtacctagatttatattataatacttgttcctattaactgcattgata 34580937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 25443613 - 25443540
Alignment:
Q  129 tattaattgcccgatacttttctgttacgcgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    |||||||||| ||||||||||| | ||| |||||||||||||||||||| ||||| ||||| ||||||||||||    
T  25443613 tattaattgctcgatacttttccgatacccgtatcggtatcggatacgtgtcggatacgatacttcaccatttt 25443540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 22205404 - 22205448
Alignment:
Q  158 cgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  22205404 cgtatcggtatcggatacgtatcggacacgattcttcaccatttt 22205448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 22229335 - 22229291
Alignment:
Q  158 cgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  22229335 cgtatcggtatcggatacgtatcggacacgattcttcaccatttt 22229291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 19928353 - 19928398
Alignment:
Q  157 gcgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  19928353 gcgtatcggtatcggatacgtgtcggatacgatacttcaccatttt 19928398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 30947522 - 30947477
Alignment:
Q  157 gcgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    |||||||||||||| |||||| ||||| ||||| ||||||||||||    
T  30947522 gcgtatcggtatcgaatacgtgtcggatacgatacttcaccatttt 30947477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 37245378 - 37245422
Alignment:
Q  158 cgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    |||||||||||| ||||||| ||||| ||||| ||||||||||||    
T  37245378 cgtatcggtatcagatacgtgtcggatacgatacttcaccatttt 37245422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 40820004 - 40820048
Alignment:
Q  158 cgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    ||||||||||||| |||||| ||||| ||||| ||||||||||||    
T  40820004 cgtatcggtatcgcatacgtgtcggatacgatacttcaccatttt 40820048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 27709937 - 27709981
Alignment:
Q  158 cgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    |||||||||||||||||||| || |||||||||||||||||||||    
T  27709937 cgtatcggtatcggatacgtgtcagacacgattcttcaccatttt 27709981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 14314495 - 14314540
Alignment:
Q  157 gcgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  14314495 gcgtatcggtatcggatacgtgtcggatacgatacttcaccatttt 14314540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 14811241 - 14811196
Alignment:
Q  157 gcgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  14811241 gcgtatcggtatcggatacgtgtcggatacgatacttcaccatttt 14811196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 14314447 - 14314483
Alignment:
Q  129 tattaattgcccgatacttttctgttacgcgtatcgg 165  Q
    |||||||||||||||||||||| | ||||||||||||    
T  14314447 tattaattgcccgatacttttccgatacgcgtatcgg 14314483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 14811289 - 14811253
Alignment:
Q  129 tattaattgcccgatacttttctgttacgcgtatcgg 165  Q
    |||||||||||||||||||||| | ||||||||||||    
T  14811289 tattaattgcccgatacttttccgatacgcgtatcgg 14811253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 32751109 - 32751153
Alignment:
Q  158 cgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    |||||||||||||||||||| ||||| |  |||||||||||||||    
T  32751109 cgtatcggtatcggatacgtgtcggatataattcttcaccatttt 32751153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 27391352 - 27391395
Alignment:
Q  159 gtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  27391352 gtatcggtatcggatacgtgtcagacacgattcttcaccatttt 27391395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 41530477 - 41530519
Alignment:
Q  160 tatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    ||||||| |||||||||| ||||||||||||||||||||||||    
T  41530477 tatcggtgtcggatacgtgtcggacacgattcttcaccatttt 41530519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 42864316 - 42864271
Alignment:
Q  157 gcgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  42864316 gcgtatcggtatcggatacgtgtcggatacgatacttcaccatttt 42864271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 24645647 - 24645691
Alignment:
Q  158 cgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    |||||| ||||||||||||| ||| ||||||||||||||||||||    
T  24645647 cgtatcagtatcggatacgtgtcgaacacgattcttcaccatttt 24645691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 958849 - 958807
Alignment:
Q  129 tattaattgcccgatacttttctgttacgcgtatcggtatcgg 171  Q
    |||||||||||||||||||||| | ||| ||||||||||||||    
T  958849 tattaattgcccgatacttttccgatacccgtatcggtatcgg 958807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 4533437 - 4533392
Alignment:
Q  157 gcgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    ||||||||||||| ||||||| ||||| ||||| ||||||||||||    
T  4533437 gcgtatcggtatcagatacgtgtcggatacgatacttcaccatttt 4533392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 39674192 - 39674156
Alignment:
Q  129 tattaattgcccgatacttttctgttacgcgtatcgg 165  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  39674192 tattaattgcccgatacttttctgatacccgtatcgg 39674156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 8862016 - 8861971
Alignment:
Q  157 gcgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  8862016 gcgtatcggtatcggatacgtgtcggatacgatacttcaccatttt 8861971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 21112065 - 21112020
Alignment:
Q  157 gcgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    |||||||| |||| ||||||||||||| ||||| ||||||||||||    
T  21112065 gcgtatcgatatccgatacgtatcggatacgatacttcaccatttt 21112020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 6665688 - 6665643
Alignment:
Q  157 gcgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||||    
T  6665688 gcgtatcggtatcgaatacgtgtcggacacgatccttcaccatttt 6665643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 26261091 - 26261018
Alignment:
Q  129 tattaattgcccgatacttttctgttacgcgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    ||||||||||||||||||| || | || |||||||||  ||||| |||  |||||||||||| |||||||||||    
T  26261091 tattaattgcccgatacttctccgatatgcgtatcggggtcggacacgcttcggacacgattgttcaccatttt 26261018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 32760483 - 32760439
Alignment:
Q  158 cgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    |||||||||||| ||||||| | ||||||||||||||||||||||    
T  32760483 cgtatcggtatcagatacgtgttggacacgattcttcaccatttt 32760439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 10786870 - 10786915
Alignment:
Q  157 gcgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    |||| |||||||||||||||| ||||| ||||| ||||||||||||    
T  10786870 gcgtctcggtatcggatacgtgtcggatacgatacttcaccatttt 10786915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 20289335 - 20289291
Alignment:
Q  158 cgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    |||||||||||| ||||||| ||||| ||||| ||||||||||||    
T  20289335 cgtatcggtatccgatacgtgtcggatacgatacttcaccatttt 20289291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 21075965 - 21075921
Alignment:
Q  158 cgtatcggtatcggatacgtatcggacacgattcttcaccatttt 202  Q
    |||||||||||| ||||||| ||||| ||||| ||||||||||||    
T  21075965 cgtatcggtatccgatacgtgtcggatacgatacttcaccatttt 21075921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 38114 - 38150
Alignment:
Q  129 tattaattgcccgatacttttctgttacgcgtatcgg 165  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  38114 tattaattgcccgatacttttctgatacccgtatcgg 38150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University