View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_low_15 (Length: 471)

Name: NF1590_low_15
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_low_15
NF1590_low_15
[»] chr3 (8 HSPs)
chr3 (61-453)||(33389413-33389807)
chr3 (71-212)||(52254515-52254659)
chr3 (61-202)||(32304945-32305087)
chr3 (61-202)||(42540875-42541017)
chr3 (61-190)||(34817571-34817701)
chr3 (98-202)||(17514402-17514506)
chr3 (51-118)||(54834164-54834233)
chr3 (61-118)||(52255283-52255341)
[»] chr1 (14 HSPs)
chr1 (61-433)||(52750394-52750768)
chr1 (71-212)||(24508446-24508590)
chr1 (61-202)||(36142355-36142497)
chr1 (61-202)||(47112334-47112476)
chr1 (51-122)||(31697347-31697420)
chr1 (103-202)||(49652666-49652758)
chr1 (61-118)||(24509217-24509275)
chr1 (51-108)||(50124366-50124425)
chr1 (71-122)||(968216-968268)
chr1 (71-118)||(29021827-29021875)
chr1 (71-118)||(52751326-52751374)
chr1 (60-118)||(968154-968213)
chr1 (419-453)||(52750767-52750801)
chr1 (73-120)||(968920-968968)
[»] chr2 (10 HSPs)
chr2 (63-283)||(3093383-3093603)
chr2 (315-453)||(3093602-3093742)
chr2 (73-202)||(28189700-28189830)
chr2 (72-202)||(8029683-8029814)
chr2 (61-202)||(20685872-20686013)
chr2 (61-202)||(19298244-19298386)
chr2 (61-202)||(40468765-40468911)
chr2 (51-121)||(10708363-10708435)
chr2 (51-122)||(12602341-12602415)
chr2 (51-122)||(8892808-8892882)
[»] chr6 (6 HSPs)
chr6 (71-212)||(901660-901802)
chr6 (61-202)||(12261165-12261307)
chr6 (61-202)||(16146320-16146462)
chr6 (61-202)||(27129084-27129226)
chr6 (61-199)||(20746300-20746440)
chr6 (71-118)||(902511-902559)
[»] chr7 (13 HSPs)
chr7 (71-212)||(17236300-17236444)
chr7 (64-199)||(8684963-8685099)
chr7 (61-202)||(17278641-17278783)
chr7 (264-368)||(30828801-30828906)
chr7 (378-453)||(30829338-30829413)
chr7 (51-118)||(14682749-14682818)
chr7 (51-118)||(30474922-30474991)
chr7 (61-145)||(30765909-30765994)
chr7 (64-121)||(25443245-25443304)
chr7 (65-120)||(18298070-18298126)
chr7 (61-118)||(17238394-17238452)
chr7 (162-202)||(30765989-30766029)
chr7 (51-122)||(18297386-18297459)
[»] chr8 (2 HSPs)
chr8 (61-202)||(13462347-13462489)
chr8 (103-158)||(9319070-9319125)
[»] chr5 (7 HSPs)
chr5 (61-202)||(6794456-6794598)
chr5 (73-202)||(23082793-23082922)
chr5 (95-202)||(22165857-22165964)
chr5 (51-118)||(38385102-38385171)
chr5 (51-118)||(13824397-13824467)
chr5 (51-118)||(24041971-24042041)
chr5 (61-100)||(38385577-38385617)
[»] chr4 (11 HSPs)
chr4 (71-212)||(50281916-50282060)
chr4 (91-212)||(13631094-13631215)
chr4 (61-202)||(9087010-9087153)
chr4 (103-202)||(40680734-40680833)
chr4 (71-169)||(44182799-44182899)
chr4 (51-118)||(45044604-45044673)
chr4 (61-118)||(44183576-44183634)
chr4 (61-118)||(50282688-50282746)
chr4 (61-118)||(13630332-13630390)
chr4 (61-122)||(26280314-26280376)
chr4 (61-100)||(45045065-45045105)
[»] scaffold0202 (1 HSPs)
scaffold0202 (61-202)||(21882-22024)


Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 61 - 453
Target Start/End: Original strand, 33389413 - 33389807
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaata--accaatttttcaattaaaaaacatccctttcaatcaaaacaacacaa 157  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||  || |||||||| |||||||| ||||||||||||||||||||||||||    
T  33389413 atcatcttcatcaaatctataaacataatcaatttcataactcaatcaatataactaatttttccattaaaaa-catccctttcaatcaaaacaacacaa 33389511  T
Q  158 tttctcaatctccctaaaccaaatcaaccaaaatctttatatctaatcaccacaannnnnnnnaaatccaaaactactctccaccatgacctgcgcacta 257  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||        ||||| |||||||||||||||||  ||||||||||||    
T  33389512 tttttcaatctccctaaaccaaatcaaccaaaatctttatatctaatcaccacaattttttttaaatcaaaaactactctccaccaccacctgcgcacta 33389611  T
Q  258 ctcgcctttgcttcatttcctgctaatatctcctccctaattcttcctcacacccccaaccaactactcactcttctaacaaactcctccctataggact 357  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33389612 ctcacctttgcttcatttcctgctaatatctcctccctaattcttctccacacccccaactaactactcactcttctaacaaactcctccctataggact 33389711  T
Q  358 cttcgctactgttcgttgttgttgtcgttgacagaagcaacaaatcaagctcaatttcctgttcctcttcttc-ttttggctcgcaggagcagtctc 453  Q
    || |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  33389712 ctccgctactg-tcgttgttgttgtcgttgtcagaagcaacaaatcaagctcaatttcttgttcctcttcttctttttggctcgcaggagcagtctc 33389807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 71 - 212
Target Start/End: Original strand, 52254515 - 52254659
Alignment:
Q  71 tcaaatctataaacataata---atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatc 167  Q
    |||||||||||||||||  |   ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||| ||||||||||||||    
T  52254515 tcaaatctataaacatataatccatttcataactcaatcaataaccaattgttccattaaaaaacatccctttcaatctaaacaatacaatttctcaatc 52254614  T
Q  168 tccctaaaccaaatcaaccaaaatctttatatctaatcaccacaa 212  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||    
T  52254615 tccctagaccaaatcaaccaaaatcttcatatctactcaccacaa 52254659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 32305087 - 32304945
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 159  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  32305087 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 32304988  T
Q  160 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 202  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  32304987 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 32304945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 42541017 - 42540875
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 159  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||  ||||||||| |||||| ||||||    
T  42541017 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatttctttcaatctaaacaatacaatt 42540918  T
Q  160 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 202  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  42540917 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 42540875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 61 - 190
Target Start/End: Original strand, 34817571 - 34817701
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 159  Q
    |||||||||  |||||||||||||||||| |||||||||||| ||||||||||||||||||  ||| |  |||||| ||| ||||| |||||||||||||    
T  34817571 atcatcttcaacaaatctataaacataatcaatttcataacttaatcaataaccaattttttcattcatgaacatctcttccaatctaaacaacacaatt 34817670  T
Q  160 tctcaatctccctaaaccaaatcaaccaaaa 190  Q
    |||||||||||||||| ||||||||||||||    
T  34817671 tctcaatctccctaaagcaaatcaaccaaaa 34817701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 17514506 - 17514402
Alignment:
Q  98 aactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccctaaaccaaatcaaccaaaatctttat 197  Q
    |||| ||||||||||||||||||| ||| | ||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  17514506 aacttaatcaataaccaatttttccattcataaacatctctttcaatctaaacaacacaatttctcaatctccctaaagcaaatcaaccaaaatcttcat 17514407  T
Q  198 atcta 202  Q
    |||||    
T  17514406 atcta 17514402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 54834164 - 54834233
Alignment:
Q  51 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 118  Q
    |||||||||| || |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  54834164 tctttttcatcattatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 54834233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 52255341 - 52255283
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 118  Q
    ||||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||    
T  52255341 atcatcttcatcatatctataaacataatcaatttcataactcaatcaacaaccaattt 52255283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 61 - 433
Target Start/End: Original strand, 52750394 - 52750768
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaa-catccctttcaatcaaaacaacacaat 158  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  52750394 atcatcttcatcaaatctataaacataatcaatttcataactcaatcaataaccaatttttccattaaaaaaacatccctttcaatcaaaacaacacaat 52750493  T
Q  159 ttctcaatctccctaaaccaaatcaaccaaaatctttatatctaatcaccacaannnnnnnnaaa-tccaaaactactctccaccatgacctgcgcacta 257  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||        ||| ||||||||||||||||||||  ||||| ||||||    
T  52750494 ttctcaatcttcctaaaccaaatcaaccaaaatctttatatctaatcactacaattttttttaaaatccaaaactactctccaccaccacctgggcacta 52750593  T
Q  258 ctcgcctttgcttcatttcctgctaatatctcctccctaattcttcctcacacccccaaccaactactcactcttctaacaaactcctccctataggact 357  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52750594 ctcacctttgcttcatttcctgctaatatctcctccctaattcttcc-cacacccccaaccaactactcactcttctaacaaactcctccctataggact 52750692  T
Q  358 cttcgctactgttcgttgttgttgtcgttgacagaagcaacaaatcaagctcaa-tttcctgttcctcttcttcttt 433  Q
    || |||||||| |||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||    
T  52750693 ctccgctactg-tcgttgttgttgtcgttggcagaagcaacaaatcaagctcaattttcatgttcctcttcttcttt 52750768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 71 - 212
Target Start/End: Original strand, 24508446 - 24508590
Alignment:
Q  71 tcaaatctataaacataata---atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatc 167  Q
    |||||||||||||||||  |   |||||||||||||| |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||    
T  24508446 tcaaatctataaacatataatctatttcataactcaaccaataaccaattttttcattaaaaaacatccctttcaatctaaacaacacaatttctcaatc 24508545  T
Q  168 tccctaaaccaaatcaaccaaaatctttatatctaatcaccacaa 212  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||    
T  24508546 tccctagaccaaatcaaccaaaatcttcatatctactcaccacaa 24508590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 36142355 - 36142497
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 159  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||| ||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  36142355 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataatcaattttttgattcataaacatctctttcaatctaaacaacacaatt 36142454  T
Q  160 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 202  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  36142455 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 36142497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 47112334 - 47112476
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 159  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  47112334 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 47112433  T
Q  160 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 202  Q
    ||||||||||||| || ||||||||||||||| || |||||||    
T  47112434 tctcaatctccctgaagcaaatcaaccaaaatattcatatcta 47112476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 31697347 - 31697420
Alignment:
Q  51 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttca 122  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  31697347 tctttttcatcatcatcttcatcaaatctataaacataatcaatttcatatctcaatcaataaccaatttttca 31697420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 103 - 202
Target Start/End: Original strand, 49652666 - 49652758
Alignment:
Q  103 aatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccctaaaccaaatcaaccaaaatctttatatcta 202  Q
    ||||||||||||||||||| ||| | ||||||| ||||||||| |||||||||||||||||||||| ||||||       ||||||||||||||||||||    
T  49652666 aatcaataaccaatttttccatttataaacatctctttcaatctaaacaacacaatttctcaatcttcctaaa-------aaccaaaatctttatatcta 49652758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 24509275 - 24509217
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 118  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  24509275 atcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 24509217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 50124425 - 50124366
Alignment:
Q  51 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaa 108  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  50124425 tctttttcatcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaa 50124366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 968216 - 968268
Alignment:
Q  71 tcaaatctataaacataat-aatttcataactcaatcaataaccaatttttca 122  Q
    |||||| |||||||||||| ||||||||| || ||||||||||||||||||||    
T  968216 tcaaatttataaacataatcaatttcatatcttaatcaataaccaatttttca 968268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 29021827 - 29021875
Alignment:
Q  71 tcaaatctataaacataat-aatttcataactcaatcaataaccaattt 118  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  29021827 tcaaatctataaacaaaatcaatttcataactcaatcaacaaccaattt 29021875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 52751374 - 52751326
Alignment:
Q  71 tcaaatctataaacataat-aatttcataactcaatcaataaccaattt 118  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  52751374 tcaaatctataaacaaaatcaatttcataactcaatcaacaaccaattt 52751326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 968154 - 968213
Alignment:
Q  60 tatcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 118  Q
    ||||||| || |||||| |||||||||||| ||||||||| || ||||||||||||||||    
T  968154 tatcatcatcatcaaatttataaacataatcaatttcatatcttaatcaataaccaattt 968213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 453
Target Start/End: Original strand, 52750767 - 52750801
Alignment:
Q  419 ttcctcttcttcttttggctcgcaggagcagtctc 453  Q
    |||||||||||||||||||||| ||||||||||||    
T  52750767 ttcctcttcttcttttggctcgtaggagcagtctc 52750801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 968968 - 968920
Alignment:
Q  73 aaatctataaacat-aataatttcataactcaatcaataaccaattttt 120  Q
    |||||||||||||| || ||||||||| |||||||||| ||||||||||    
T  968968 aaatctataaacataaacaatttcatatctcaatcaatcaccaattttt 968920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 173; Significance: 8e-93; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 63 - 283
Target Start/End: Original strand, 3093383 - 3093603
Alignment:
Q  63 catcttcgtcaaatctataaacataataatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttct 162  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |    
T  3093383 catcttcatcaaatctataaacataataatttcataactcaatcaataaccaatttttccattaaaaaatatccctttcaatcaaaacaacacaatttat 3093482  T
Q  163 caatctccctaaaccaaatcaaccaaaatctttatatctaatcaccacaannnnnnnnaaatccaaaactactctccaccatgacctgcgcactactcgc 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||| ||||||||||||||| |    
T  3093483 caatctccctaaaccaaatcaaccaaaatctttatatctaatcaccacaattttttttaaatccaaaactactctccaccatcacctgcgcactactcac 3093582  T
Q  263 ctttgcttcatttcctgctaa 283  Q
    |||||||||||||||||||||    
T  3093583 ctttgcttcatttcctgctaa 3093603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 315 - 453
Target Start/End: Original strand, 3093602 - 3093742
Alignment:
Q  315 aaccaactactcactcttctaacaaactcctccctataggactcttcgctactgt--tcgttgttgttgtcgttgacagaagcaacaaatcaagctcaat 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||  |||| || |||||||||||||||||||||||||||||||||||    
T  3093602 aaccaactactcactcttctaacaaactcctccctataggactctctgctactgtcatcgtcgtcgttgtcgttgacagaagcaacaaatcaagctcaat 3093701  T
Q  413 ttcctgttcctcttcttcttttggctcgcaggagcagtctc 453  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  3093702 ttcctgttcctcttcttcttttggctcgcatgagcagtctc 3093742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 73 - 202
Target Start/End: Original strand, 28189700 - 28189830
Alignment:
Q  73 aaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccc 171  Q
    |||| |||||||||||| |||||||||||| ||||||||| ||||||||  ||| | ||||||| ||||||||| |||||||||||||||||||||||||    
T  28189700 aaatatataaacataatcaatttcataacttaatcaataatcaattttttcattcataaacatctctttcaatctaaacaacacaatttctcaatctccc 28189799  T
Q  172 taaaccaaatcaaccaaaatctttatatcta 202  Q
    |||| |||||||||||||||||| |||||||    
T  28189800 taaagcaaatcaaccaaaatcttcatatcta 28189830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 8029814 - 8029683
Alignment:
Q  72 caaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctcc 170  Q
    ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| | ||||||||||||||||||||||    
T  8029814 caaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctatacaacacaatttctcaatctcc 8029715  T
Q  171 ctaaaccaaatcaaccaaaatctttatatcta 202  Q
     |||| |||||||||||||||||| |||||||    
T  8029714 ataaagcaaatcaaccaaaatcttcatatcta 8029683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 20685872 - 20686013
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 159  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | |||||||  |||||||| |||||||||||||    
T  20685872 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctatttcaatctaaacaacacaatt 20685971  T
Q  160 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 202  Q
    |||||||||||||||| |||||||||| ||||||| |||||||    
T  20685972 tctcaatctccctaaagcaaatcaacc-aaatcttcatatcta 20686013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 19298386 - 19298244
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 159  Q
    |||||||||  ||||| |||||||| ||| |||||||||| | ||||||||||||||||||  ||| | ||||||| ||||||||| | |||||||||||    
T  19298386 atcatcttcaacaaatatataaacaaaatcaatttcataatttaatcaataaccaattttttcattcataaacatctctttcaatctacacaacacaatt 19298287  T
Q  160 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 202  Q
    ||||||||| |||||| |||||||||||||||||| |||||||    
T  19298286 tctcaatcttcctaaaacaaatcaaccaaaatcttcatatcta 19298244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 40468911 - 40468765
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 159  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | |||||||  |||||||| |||||||||||||    
T  40468911 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctatttcaatctaaacaacacaatt 40468812  T
Q  160 tctcaatctccc----taaaccaaatcaaccaaaatctttatatcta 202  Q
    ||||||||||||    |||| |||||||||||||||||| |||||||    
T  40468811 tctcaatctccctaattaaagcaaatcaaccaaaatcttcatatcta 40468765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 10708363 - 10708435
Alignment:
Q  51 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttc 121  Q
    |||||||||| || |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10708363 tctttttcatcataatcttcatcaaatctataaacataatcaatttcataactcaatcaataaccaatttttc 10708435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 12602415 - 12602341
Alignment:
Q  51 tctttttcat-atcatcttcgtcaaatctataaacat-aat-aatttcataactcaatcaataaccaatttttca 122  Q
    |||||||||| || |||||| |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||    
T  12602415 tctttttcatcattatcttcatcaaatctataaacattaatcaatttcatatctcaatcaataaccaatttttca 12602341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 8892882 - 8892808
Alignment:
Q  51 tctttttcat-atcatcttcgtcaaatctataaaca-taat-aatttcataactcaatcaataaccaatttttca 122  Q
    |||||||||| ||||||||| ||||||||||||||| |||| |||||| || ||| ||||||||| |||||||||    
T  8892882 tctttttcatcatcatcttcatcaaatctataaacattaatcaatttcgtatctccatcaataacaaatttttca 8892808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 71 - 212
Target Start/End: Original strand, 901660 - 901802
Alignment:
Q  71 tcaaatctataaacataata-atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctc 169  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  901660 tcaaatctataaacataatctatttcataactcaatcaataaccaatttttccattaaaaaacatccctttcaatctaaacaacacaatttatcaatctc 901759  T
Q  170 cctaaaccaaatcaaccaaaatctttatatctaatcaccacaa 212  Q
     |||||||||||||||||||||||| ||||||| |||||||||    
T  901760 tctaaaccaaatcaaccaaaatcttcatatctactcaccacaa 901802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 12261307 - 12261165
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 159  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  12261307 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 12261208  T
Q  160 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 202  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  12261207 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 12261165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 16146320 - 16146462
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 159  Q
    |||||||||  ||||| |||||||| ||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  16146320 atcatcttcaacaaatatataaacaaaatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 16146419  T
Q  160 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 202  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  16146420 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 16146462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 27129084 - 27129226
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 159  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| ||||| |||||||    
T  27129084 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacatcacaatt 27129183  T
Q  160 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 202  Q
    | |||||||||||||| |||||||||||||||||| |||||||    
T  27129184 tttcaatctccctaaagcaaatcaaccaaaatcttcatatcta 27129226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 61 - 199
Target Start/End: Complemental strand, 20746440 - 20746300
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttca-attaaaaaacatccctttcaatcaaaacaacacaat 158  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||   ||| | ||||||| ||||||||| ||||||||||||    
T  20746440 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaatttttttcattcataaacatctctttcaatctaaacaacacaat 20746341  T
Q  159 ttctcaatctccctaaaccaaatcaaccaaaatctttatat 199  Q
    |||||||||| |||||| |||||||||||||||||| ||||    
T  20746340 ttctcaatcttcctaaagcaaatcaaccaaaatcttcatat 20746300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 902559 - 902511
Alignment:
Q  71 tcaaatctataaacataat-aatttcataactcaatcaataaccaattt 118  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  902559 tcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 902511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 71 - 212
Target Start/End: Original strand, 17236300 - 17236444
Alignment:
Q  71 tcaaatctataaacataata---atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatc 167  Q
    |||||||||||||||||  |   ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||    
T  17236300 tcaaatctataaacatataatccatttcataactcaatcaataaccaatttttccattaaaaaacatccctttcaatctaaacaatacaatttctcaatc 17236399  T
Q  168 tccctaaaccaaatcaaccaaaatctttatatctaatcaccacaa 212  Q
    |||||| |||||||||||||||||||| |||| || |||||||||    
T  17236400 tccctagaccaaatcaaccaaaatcttcatatatactcaccacaa 17236444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 64 - 199
Target Start/End: Original strand, 8684963 - 8685099
Alignment:
Q  64 atcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttct 162  Q
    |||||| ||||| ||||||||||||| ||||| ||||||||||||| |||||||||||| ||| |||||||||| |||||||| ||||||||||||||||    
T  8684963 atcttcatcaaacctataaacataatcaattttataactcaatcaacaaccaatttttccattcaaaaacatccatttcaatctaaacaacacaatttct 8685062  T
Q  163 caatctccctaaaccaaatcaaccaaaatctttatat 199  Q
    |||||||||||||||||||||||||||||||| ||||    
T  8685063 caatctccctaaaccaaatcaaccaaaatcttcatat 8685099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 17278641 - 17278783
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 159  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  17278641 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 17278740  T
Q  160 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 202  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  17278741 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 17278783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 264 - 368
Target Start/End: Original strand, 30828801 - 30828906
Alignment:
Q  264 tttgcttcatttcctgctaatatctcctccctaattcttcctcacacccc-caaccaactactcactcttctaacaaactcctccctataggactcttcg 362  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  30828801 tttgcttcatttcctgctaacatctcctccctaattcttcctcacaccccccaaccaactactcactcttctaacaaactcctccctatagcactctccg 30828900  T
Q  363 ctactg 368  Q
    ||||||    
T  30828901 ctactg 30828906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 378 - 453
Target Start/End: Original strand, 30829338 - 30829413
Alignment:
Q  378 gttgtcgttgacagaagcaacaaatcaagctcaatttcctgttcctcttcttcttttggctcgcaggagcagtctc 453  Q
    ||||||||| |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  30829338 gttgtcgttaacagaagcaataaatcaagctcaatttcatgttcttcttcttcttttggctcgccggagcagtctc 30829413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 14682818 - 14682749
Alignment:
Q  51 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 118  Q
    |||||||||| || |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  14682818 tctttttcatcattatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 14682749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 30474991 - 30474922
Alignment:
Q  51 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 118  Q
    |||||||||| ||||||||  ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  30474991 tctttttcatcatcatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 30474922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 30765909 - 30765994
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatc 145  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| |||||||||    
T  30765909 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatc 30765994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 25443245 - 25443304
Alignment:
Q  64 atcttcgtcaaatctataaacataa--taatttcataactcaatcaataaccaatttttc 121  Q
    |||||| ||||||||||||||||||  |||||||||||||||||| ||||||||||||||    
T  25443245 atcttcatcaaatctataaacataaattaatttcataactcaatctataaccaatttttc 25443304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 18298126 - 18298070
Alignment:
Q  65 tcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattttt 120  Q
    ||||| ||||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  18298126 tcttcatcaaatctataaacataaacaatttcatatctcaatcaataaccaattttt 18298070  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 17238452 - 17238394
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 118  Q
    |||||||||  |||||||||||||||||| ||||||||||||||||||| || ||||||    
T  17238452 atcatcttcagcaaatctataaacataatcaatttcataactcaatcaacaatcaattt 17238394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 30765989 - 30766029
Alignment:
Q  162 tcaatctccctaaaccaaatcaaccaaaatctttatatcta 202  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  30765989 tcaatctccctaaagcaaatcaaccaaaatcttcatatcta 30766029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 18297386 - 18297459
Alignment:
Q  51 tctttttcat-atcatcttcgtcaaatctataaacataataa-tttcataactcaatcaataaccaatttttca 122  Q
    |||||||||| | ||| ||| |||||| |||||||||||| | ||||||| || ||||||||||||||||||||    
T  18297386 tctttttcatcaccatgttcatcaaatttataaacataatgagtttcatatcttaatcaataaccaatttttca 18297459  T

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Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 61 - 202
Target Start/End: Original strand, 13462347 - 13462489
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 159  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  13462347 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 13462446  T
Q  160 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 202  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  13462447 tctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 13462489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 9319125 - 9319070
Alignment:
Q  103 aatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaat 158  Q
    ||||||||||||||||||  ||| ||||||||||||||||||| ||||||||||||    
T  9319125 aatcaataaccaattttttcattcaaaaacatccctttcaatctaaacaacacaat 9319070  T

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Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 6794598 - 6794456
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 159  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||||||    
T  6794598 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatt 6794499  T
Q  160 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 202  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  6794498 tctcaatctccctaaaacaaatcaaccaaaatcttcatatcta 6794456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 73 - 202
Target Start/End: Original strand, 23082793 - 23082922
Alignment:
Q  73 aaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccc 171  Q
    |||| |||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| ||||||||||||||||||| |||||    
T  23082793 aaatatataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaacacaatttctcaa-ctccc 23082891  T
Q  172 taaaccaaatcaaccaaaatctttatatcta 202  Q
    |||| |||||||||||||||||| |||||||    
T  23082892 taaagcaaatcaaccaaaatcttcatatcta 23082922  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 95 - 202
Target Start/End: Complemental strand, 22165964 - 22165857
Alignment:
Q  95 cataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccctaaaccaaatcaaccaaaatctt 194  Q
    ||||||||||||||||||||||||| || | |||||||||| |||||| |  ||||||||||| |||||||||||| |||| ||||||||||||||||||    
T  22165964 cataactcaatcaataaccaattttccactaaaaaaacatcactttcatttcaaacaacacaaattctcaatctccataaatcaaatcaaccaaaatctt 22165865  T
Q  195 tatatcta 202  Q
     |||||||    
T  22165864 catatcta 22165857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 38385102 - 38385171
Alignment:
Q  51 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 118  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  38385102 tctttttcatcatcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 38385171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 13824467 - 13824397
Alignment:
Q  51 tctttttcat-atcatcttcgtcaaatctataaaca-taat-aatttcataactcaatcaataaccaattt 118  Q
    |||||||||| ||||||||| ||||||||||||||| |||| ||||||||| ||| |||||||||||||||    
T  13824467 tctttttcatcatcatcttcatcaaatctataaacattaatcaatttcatatctccatcaataaccaattt 13824397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 24041971 - 24042041
Alignment:
Q  51 tctttttcat-atcatcttcgtcaaatctataaaca-taat-aatttcataactcaatcaataaccaattt 118  Q
    |||||||||| ||||||||| ||||||||||||||| |||| ||||||||| ||| |||||||||||||||    
T  24041971 tctttttcatcatcatcttcatcaaatctataaacattaatcaatttcatatctccatcaataaccaattt 24042041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 38385617 - 38385577
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataac 100  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  38385617 atcatcttcatcaaatctataaacataatcaatttcataac 38385577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 71 - 212
Target Start/End: Original strand, 50281916 - 50282060
Alignment:
Q  71 tcaaatctataaacataata---atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatc 167  Q
    |||||||||||||||||  |   ||||||||||||||||||||| ||||||||| ||||||  ||||||||||||||| |||||| ||||||||||||||    
T  50281916 tcaaatctataaacatataatccatttcataactcaatcaataatcaatttttccattaaattacatccctttcaatctaaacaatacaatttctcaatc 50282015  T
Q  168 tccctaaaccaaatcaaccaaaatctttatatctaatcaccacaa 212  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||    
T  50282016 tccctagaccaaatcaaccaaaatcttcatatctactcaccacaa 50282060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 13631215 - 13631094
Alignment:
Q  91 atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccctaaaccaaatcaaccaaaa 190  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||| ||||||    
T  13631215 atttcataacttaatcaataaccaatttttccattcaaaaacatccatttcaatctaaacaacacaatttatcaatctctctaaaccaaatcatccaaaa 13631116  T
Q  191 tctttatatctaatcaccacaa 212  Q
    |||| ||||||| |||||||||    
T  13631115 tcttcatatctactcaccacaa 13631094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 9087153 - 9087010
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttca-attaaaaaacatccctttcaatcaaaacaacacaat 158  Q
    |||||||||  ||||| |||||||||||| |||||||||||| ||||||||||||||||||   ||| | ||||||| ||||||||| ||||||||||||    
T  9087153 atcatcttcaacaaatatataaacataatcaatttcataacttaatcaataaccaatttttttcattcataaacatctctttcaatctaaacaacacaat 9087054  T
Q  159 ttctcaatctccctaaaccaaatcaaccaaaatctttatatcta 202  Q
    ||||||||||||||||| |||||||||||||||||| |||||||    
T  9087053 ttctcaatctccctaaaacaaatcaaccaaaatcttcatatcta 9087010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 103 - 202
Target Start/End: Original strand, 40680734 - 40680833
Alignment:
Q  103 aatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatctccctaaaccaaatcaaccaaaatctttatatcta 202  Q
    ||||||||| ||||||||  ||| | ||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  40680734 aatcaataatcaattttttcattcataaacatctctttcaatctaaacaacacaatttctcaatctccctaaagcaaatcaaccaaaatcttcatatcta 40680833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 44182799 - 44182899
Alignment:
Q  71 tcaaatctataaacataata---atttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatttctcaatc 167  Q
    |||||||||||||||||  |   |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| ||||||||||||||    
T  44182799 tcaaatctataaacatataatccatttcataactcaatcaataacca-tttttccattaaaaaacatccctttcaatctaaacaatacaatttctcaatc 44182897  T
Q  168 tc 169  Q
    ||    
T  44182898 tc 44182899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 45044604 - 45044673
Alignment:
Q  51 tctttttcat-atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 118  Q
    |||||||||| ||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  45044604 tctttttcatcatcatcttcatcaaatatataaacataatcaatttcataactcaatcaataaccaattt 45044673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 44183634 - 44183576
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 118  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  44183634 atcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 44183576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 50282746 - 50282688
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 118  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  50282746 atcatcttcatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 50282688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 13630332 - 13630390
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaattt 118  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  13630332 atcatctttatcaaatctataaacataatcaatttcataactcaatcaacaaccaattt 13630390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 26280314 - 26280376
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttca 122  Q
    ||||| ||| |||||| |||||||||||| ||||||||| || ||||||||||||||||||||    
T  26280314 atcatgttcatcaaatttataaacataatgaatttcatatcttaatcaataaccaatttttca 26280376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 45045105 - 45045065
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataac 100  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  45045105 atcatcttcatcaaatctataaacataatcaatttcataac 45045065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 61 - 202
Target Start/End: Complemental strand, 22024 - 21882
Alignment:
Q  61 atcatcttcgtcaaatctataaacataat-aatttcataactcaatcaataaccaatttttcaattaaaaaacatccctttcaatcaaaacaacacaatt 159  Q
    |||||||||  |||||||||||||||||| |||||||||||| ||||||||||||||||||  ||| | ||||||| ||||||||| ||||||| |||||    
T  22024 atcatcttcaacaaatctataaacataatcaatttcataacttaatcaataaccaattttttcattcataaacatctctttcaatctaaacaactcaatt 21925  T
Q  160 tctcaatctccctaaaccaaatcaaccaaaatctttatatcta 202  Q
    |||||||||||||||| |||||||||||||| ||| |||||||    
T  21924 tctcaatctccctaaagcaaatcaaccaaaaccttcatatcta 21882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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