View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_low_17 (Length: 459)

Name: NF1590_low_17
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_low_17
NF1590_low_17
[»] scaffold0740 (2 HSPs)
scaffold0740 (153-450)||(3179-3474)
scaffold0740 (18-161)||(2749-2892)
[»] chr6 (6 HSPs)
chr6 (182-374)||(32983468-32983659)
chr6 (18-108)||(15107736-15107826)
chr6 (18-105)||(19403286-19403373)
chr6 (183-247)||(17865869-17865933)
chr6 (183-247)||(29411165-29411229)
chr6 (183-247)||(9393012-9393075)
[»] chr5 (5 HSPs)
chr5 (183-374)||(18924588-18924778)
chr5 (18-108)||(11140962-11141052)
chr5 (268-378)||(25942300-25942408)
chr5 (186-247)||(34234459-34234520)
chr5 (183-212)||(25942214-25942243)
[»] chr3 (9 HSPs)
chr3 (18-108)||(4179210-4179300)
chr3 (18-108)||(4172883-4172973)
chr3 (25-108)||(30694681-30694764)
chr3 (21-108)||(45731511-45731598)
chr3 (17-108)||(46589890-46589981)
chr3 (183-366)||(34056857-34057039)
chr3 (182-354)||(14309083-14309262)
chr3 (183-237)||(5050323-5050377)
chr3 (183-247)||(2874197-2874261)
[»] scaffold0105 (1 HSPs)
scaffold0105 (18-106)||(18661-18749)
[»] chr4 (4 HSPs)
chr4 (18-106)||(8192086-8192174)
chr4 (18-108)||(54421011-54421101)
chr4 (194-247)||(32671226-32671279)
chr4 (183-247)||(29895978-29896042)
[»] chr2 (9 HSPs)
chr2 (183-374)||(25424244-25424434)
chr2 (18-101)||(9795545-9795628)
chr2 (18-105)||(35917847-35917934)
chr2 (183-246)||(44789848-44789911)
chr2 (301-374)||(23152989-23153062)
chr2 (301-374)||(23564246-23564319)
chr2 (271-375)||(39614781-39614884)
chr2 (183-231)||(21546909-21546957)
chr2 (183-247)||(27155862-27155925)
[»] chr1 (4 HSPs)
chr1 (17-108)||(27024296-27024387)
chr1 (66-138)||(7713728-7713805)
chr1 (190-247)||(31316452-31316509)
chr1 (183-247)||(42879661-42879725)
[»] chr7 (5 HSPs)
chr7 (18-106)||(37381511-37381599)
chr7 (18-102)||(48260733-48260817)
chr7 (18-105)||(42694751-42694838)
chr7 (183-247)||(21571244-21571308)
chr7 (147-184)||(10024211-10024248)
[»] scaffold1619 (1 HSPs)
scaffold1619 (18-108)||(689-779)
[»] chr8 (5 HSPs)
chr8 (18-105)||(40147455-40147542)
chr8 (18-104)||(14139418-14139504)
chr8 (62-108)||(13767136-13767182)
chr8 (181-228)||(25115407-25115454)
chr8 (179-247)||(32134880-32134948)
[»] scaffold0735 (1 HSPs)
scaffold0735 (183-247)||(3315-3379)
[»] scaffold0057 (1 HSPs)
scaffold0057 (22-108)||(60640-60723)


Alignment Details
Target: scaffold0740 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 153 - 450
Target Start/End: Original strand, 3179 - 3474
Alignment:
Q  153 taaaaattaagaggaaaagaaattgctatgtgtgaagaagatttccttcttagacttggccgaattttgatgataacaaattcatatcacaaaagnnnnn 252  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||| ||| ||||||||||         
T  3179 taaaaattaagaggaaatgaaactgctatgtgcgaagaagatttccttcttagatttggctgaactttgatgataacaaactcacatcacaaaagaagaa 3278  T
Q  253 nnnctatagaggtttaagttgaagaatgaaaataatggaacttaaagcttcatagttatatttttgtaagtaaagtccttattttttatttatcattctt 352  Q
       |||| |||||||||||||||||||||| ||||||| |||||| ||||||| |||||||||||||||||| | ||||||||||| |||||||||||||    
T  3279 aaactatggaggtttaagttgaagaatgaagataatgggacttaa-gcttcattgttatatttttgtaagtatattccttatttttgatttatcattctt 3377  T
Q  353 aatttatgcaacaagttagaatactcnnnnnnntaattataaacatttttctccctacatttttaactcaaatgataaaaacacggttggagtattat 450  Q
    || ||||  ||||| ||||||||||        |||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  3378 aacttatagaacaacttagaatact-aagaaaataattacaaacgtttttctccctgcatttttaactcaaatgataaaaacacggttggggtattat 3474  T

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Target: scaffold0740; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 2749 - 2892
Alignment:
Q  18 aaaaagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacacgtatgtacacca 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2749 aaaaagtgaagtttgtaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacacgtacgtacacca 2848  T
Q  118 aaaaattaatcataaccgcaacgaccactaatttataaaaatta 161  Q
    ||||||||||||||||||||| | |   ||||||||||||||||    
T  2849 aaaaattaatcataaccgcaagggctgttaatttataaaaatta 2892  T

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Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 182 - 374
Target Start/End: Original strand, 32983468 - 32983659
Alignment:
Q  182 gtgtgaagaagatttccttcttagacttggccgaattttgatgataacaaattcatatcacaaaagnnnnnnnnctatagaggtttaagttgaagaatga 281  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||| | | || |||||||        | || |||| | ||||||||||||||    
T  32983468 gtgtgaagaagatttccttcttagacttgactgaattttgatgataacaaacttacataacaaaagaagaaaaaccatggaggctcaagttgaagaatga 32983567  T
Q  282 aaataatggaacttaaagcttcatagttatatttttgtaagtaaagtccttattttttatttatcattcttaatttatgcaacaagttagaat 374  Q
    | | ||||| |||||  ||||||||||||||||||||||||||  |||||||| ||| ||||||||||||||| ||||| ||||| |||||||    
T  32983568 agacaatgggacttag-gcttcatagttatatttttgtaagtatggtccttatctttgatttatcattcttaacttatggaacaacttagaat 32983659  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 15107736 - 15107826
Alignment:
Q  18 aaaaagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacacgta 108  Q
    ||||||||||||||||||||| ||| |||| || | ||||| |||||||||| | ||||||||||||||||||||| ||||||||||||||    
T  15107736 aaaaagtgaagtttctaatgaaaaagttatcatctagatcagtcaaattatctacaattttaaagatgcaactttactatcgtaacacgta 15107826  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 19403373 - 19403286
Alignment:
Q  18 aaaaagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacac 105  Q
    |||||||||| ||||||||||  ||||||  || || |||| |||||||||| | ||||||||||||||||||||||||| |||||||    
T  19403373 aaaaagtgaaatttctaatgaataaattaccatctgaatcagtcaaattatctacaattttaaagatgcaactttaatattgtaacac 19403286  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 17865869 - 17865933
Alignment:
Q  183 tgtgaagaagatttccttcttagacttggccgaattttgatgataacaaattcatatcacaaaag 247  Q
    |||||||||||||||||||||||||||||     |||||||||||||||| ||||||||||||||    
T  17865869 tgtgaagaagatttccttcttagacttggtttggttttgatgataacaaactcatatcacaaaag 17865933  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 29411229 - 29411165
Alignment:
Q  183 tgtgaagaagatttccttcttagacttggccgaattttgatgataacaaattcatatcacaaaag 247  Q
    ||||||||||||||| |||||| |||||||    |||||||||||||||| ||||||||||||||    
T  29411229 tgtgaagaagatttctttcttaaacttggctaggttttgatgataacaaactcatatcacaaaag 29411165  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 9393012 - 9393075
Alignment:
Q  183 tgtgaagaagatttccttcttagacttggccgaattttgatgataacaaattcatatcacaaaag 247  Q
    ||||||||||||||| ||||||||||||   ||||||| || ||||||||| |||||||||||||    
T  9393012 tgtgaagaagatttctttcttagacttgaatgaatttt-ataataacaaatacatatcacaaaag 9393075  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 183 - 374
Target Start/End: Original strand, 18924588 - 18924778
Alignment:
Q  183 tgtgaagaagatttccttcttagacttggccgaattttgatgataacaaattcatatcacaaaagnnnnnnnnctatagaggtttaagttgaagaatgaa 282  Q
    |||||||||||||| ||||||||||||| | ||||||||||||||||||| ||| ||||||||||         ||  |||| | || ||||||||||||    
T  18924588 tgtgaagaagattttcttcttagacttgactgaattttgatgataacaaactcacatcacaaaagaagaaaaattacggaggctcaaattgaagaatgaa 18924687  T
Q  283 aataatggaacttaaagcttcatagttatatttttgtaagtaaagtccttattttttatttatcattcttaatttatgcaacaagttagaat 374  Q
     |||||   | |||  |||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||||| ||||| |||||||    
T  18924688 gataatatgatttag-gcttcatagttatatttttgtaagtataatccttatctttgatttatcattcttaatttatggaacaacttagaat 18924778  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 11141052 - 11140962
Alignment:
Q  18 aaaaagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacacgta 108  Q
    ||||||||||||||||||||| |||||||| |||||||||| | |||||||| | |||||||||||||||||||||||||| |||||||||    
T  11141052 aaaaagtgaagtttctaatgaaaaaattatcatttggatcagtaaaattatctacaattttaaagatgcaactttaatatcataacacgta 11140962  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 378
Target Start/End: Original strand, 25942300 - 25942408
Alignment:
Q  268 aagttgaagaatgaaaataatggaacttaaagcttcatagttatatttttgtaagtaaagtccttattttttatttatcattcttaatttatgcaacaag 367  Q
    ||||||||||||||| |||||||||||| | ||||||| ||||||||||||||||||  ||| ||| | ||||||||| ||| |||| ||||| |||||     
T  25942300 aagttgaagaatgaagataatggaactt-aggcttcattgttatatttttgtaagtattgtcttta-tctttatttatgattattaacttatggaacaac 25942397  T
Q  368 ttagaatactc 378  Q
    |||||||||||    
T  25942398 ttagaatactc 25942408  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 34234459 - 34234520
Alignment:
Q  186 gaagaagatttccttcttagacttggccgaattttgatgataacaaattcatatcacaaaag 247  Q
    |||||||||||| |||||||||||||| || |||||||||||||||| ||| ||||||||||    
T  34234459 gaagaagatttctttcttagacttggctgagttttgatgataacaaactcacatcacaaaag 34234520  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 212
Target Start/End: Original strand, 25942214 - 25942243
Alignment:
Q  183 tgtgaagaagatttccttcttagacttggc 212  Q
    ||||||||||||||||||||||||||||||    
T  25942214 tgtgaagaagatttccttcttagacttggc 25942243  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 4179300 - 4179210
Alignment:
Q  18 aaaaagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacacgta 108  Q
    |||||||||||||||||||||||||||||| || ||||||| |||||||||| | |||||||||||| ||||||||||||||||| |||||    
T  4179300 aaaaagtgaagtttctaatgataaaattatcatctggatcagtcaaattatctacaattttaaagatacaactttaatatcgtaaaacgta 4179210  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 4172973 - 4172883
Alignment:
Q  18 aaaaagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacacgta 108  Q
    |||||||||||||||||||||||||||||| || || |||| |||||||||| | |||||||||||| ||||||||||||||||| |||||    
T  4172973 aaaaagtgaagtttctaatgataaaattatcatctgaatcagtcaaattatctacaattttaaagatacaactttaatatcgtaaaacgta 4172883  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 30694681 - 30694764
Alignment:
Q  25 gaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacacgta 108  Q
    ||||||||||||||||||||||| || | ||||||||||||||||   |||||||||||||||||||||||||||||| |||||    
T  30694681 gaagtttctaatgataaaattatcatctagatcaatcaaattatctccaattttaaagatgcaactttaatatcgtaaaacgta 30694764  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 45731511 - 45731598
Alignment:
Q  21 aagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacacgta 108  Q
    |||||||||||||||| || ||||||| ||||| || | |||||||||||| |||||||||||||||||||||||||||||| |||||    
T  45731511 aagtgaagtttctaataattaaattatcatttgaattagtcaaattatcaacaattttaaagatgcaactttaatatcgtaatacgta 45731598  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 46589890 - 46589981
Alignment:
Q  17 aaaaaagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacacgta 108  Q
    |||||||||||||||||||| |||||||||| || | ||||| |||||||||| | |||||||||||||||||||||||||| ||| |||||    
T  46589890 aaaaaagtgaagtttctaataataaaattatcatctagatcagtcaaattatctacaattttaaagatgcaactttaatatcataaaacgta 46589981  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 366
Target Start/End: Complemental strand, 34057039 - 34056857
Alignment:
Q  183 tgtgaagaagatttccttcttagacttggccgaattttgatgataacaaattcatatcacaaaagnnnnnnnnctatagaggtttaagttgaagaatgaa 282  Q
    |||||||||| ||||||||||||| ||||  || |||||||||||| ||| ||| |||| |||||         ||| |||| | |||||||||||||||    
T  34057039 tgtgaagaagttttccttcttagatttggttgagttttgatgataataaactcacatcataaaagaagaaaaattatggaggctcaagttgaagaatgaa 34056940  T
Q  283 aataatggaacttaaagcttcatagttatatttttgtaagtaaagtccttat-tttttatttatcattcttaatttatgcaacaa 366  Q
     | ||||  | |||  ||||||||||||||||||||||||||  |||||||| |||| ||||||||||||||| ||||| |||||    
T  34056939 ga-aatgagatttag-gcttcatagttatatttttgtaagtatggtccttatattttgatttatcattcttaacttatggaacaa 34056857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 182 - 354
Target Start/End: Complemental strand, 14309262 - 14309083
Alignment:
Q  182 gtgtgaagaagatttccttcttagacttggccgaattttgatgataa--------caaattcatatcacaaaagnnnnnnnnctatagaggtttaagttg 273  Q
    ||||||||||||||||||||||||||||||| |  ||||||||||||        |||| ||| |||||||||         |||| |||| | ||||||    
T  14309262 gtgtgaagaagatttccttcttagacttggctgggttttgatgataagttgataacaaactcacatcacaaaaaaagaaaaactatggaggctcaagttg 14309163  T
Q  274 aagaatgaaaataatggaacttaaagcttcatagttatatttttgtaagtaaagtccttattttttatttatcattcttaa 354  Q
    |||||  || ||||||| ||||| | |||||||||||||||||||||| ||  |||||||| ||| |||||||||||||||    
T  14309162 aagaagaaagataatgggacttaga-cttcatagttatatttttgtaattatggtccttatctttgatttatcattcttaa 14309083  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 5050323 - 5050377
Alignment:
Q  183 tgtgaagaagatttccttcttagacttggccgaattttgatgataacaaattcat 237  Q
    ||||||||||||||| |||||||||||| |||| |||||||||||||||| ||||    
T  5050323 tgtgaagaagatttcattcttagacttgaccgagttttgatgataacaaactcat 5050377  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 2874261 - 2874197
Alignment:
Q  183 tgtgaagaagatttccttcttagacttggccgaattttgatgataacaaattcatatcacaaaag 247  Q
    |||||||||||||| ||||||||||||||  || ||| |||||||||||| ||| ||||||||||    
T  2874261 tgtgaagaagattttcttcttagacttggatgagtttcgatgataacaaactcacatcacaaaag 2874197  T

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Target: scaffold0105 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 18661 - 18749
Alignment:
Q  18 aaaaagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacacg 106  Q
    ||||||| |||||||||||||||| ||||| || ||||||| | |||||||||| ||||||||||||||||||||||||||||||||||    
T  18661 aaaaagtaaagtttctaatgataatattatcatctggatcagttaaattatcaacaattttaaagatgcaactttaatatcgtaacacg 18749  T

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Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 8192086 - 8192174
Alignment:
Q  18 aaaaagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacacg 106  Q
    ||||||| |||||||||||||||| ||||| || ||||||| | |||||||||| ||||||||||||||||||||||||||||||||||    
T  8192086 aaaaagtaaagtttctaatgataatattatcatctggatcagttaaattatcaacaattttaaagatgcaactttaatatcgtaacacg 8192174  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 54421101 - 54421011
Alignment:
Q  18 aaaaagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacacgta 108  Q
    ||||||||||||||||||||| |||||||| || || |||| || |||| || | ||||||||||||||||||||||||||||||||||||    
T  54421101 aaaaagtgaagtttctaatgaaaaaattatcatctgaatcagtcgaattgtctacaattttaaagatgcaactttaatatcgtaacacgta 54421011  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 32671226 - 32671279
Alignment:
Q  194 tttccttcttagacttggccgaattttgatgataacaaattcatatcacaaaag 247  Q
    ||||||||||||||||| | |  |||||||||||||||||||| ||||||||||    
T  32671226 tttccttcttagacttgactgggttttgatgataacaaattcacatcacaaaag 32671279  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 29895978 - 29896042
Alignment:
Q  183 tgtgaagaagatttccttcttagacttggccgaattttgatgataacaaattcatatcacaaaag 247  Q
    |||||||||||||||||||||| | ||||| |  ||| |||||||||||| ||| ||||||||||    
T  29895978 tgtgaagaagatttccttcttaaatttggctgggtttcgatgataacaaactcacatcacaaaag 29896042  T

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Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 183 - 374
Target Start/End: Complemental strand, 25424434 - 25424244
Alignment:
Q  183 tgtgaagaagatttccttcttagacttggccgaattttgatgataacaaattcatatcacaaaagnnnnnnnnctatagaggtttaagttgaagaatgaa 282  Q
    |||||||||||||| ||||||||||||||| || |||||||||||||||| ||| ||||||||||        | || |||| | |||||||||||||||    
T  25424434 tgtgaagaagattttcttcttagacttggctgagttttgatgataacaaactcacatcacaaaagaagaaaaaccatggaggctcaagttgaagaatgaa 25424335  T
Q  283 aataatggaacttaaagcttcatagttatatttttgtaagtaaagtccttat-tttttatttatcattcttaatttatgcaacaagttagaat 374  Q
     | ||||| |||| | ||||||||||| |||||||  |||||  |||||||| |||| ||||||||||||||| ||||| ||||| |||||||    
T  25424334 ga-aatgggactt-aggcttcatagttgtatttttccaagtatggtccttatcttttgatttatcattcttaacttatggaacaacttagaat 25424244  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 9795628 - 9795545
Alignment:
Q  18 aaaaagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgta 101  Q
    |||||||||||||||||||||||||||||| || | ||| | |||||||||| | |||||||||||||||||||||||||||||    
T  9795628 aaaaagtgaagtttctaatgataaaattatcatctagattagtcaaattatctacaattttaaagatgcaactttaatatcgta 9795545  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 35917847 - 35917934
Alignment:
Q  18 aaaaagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacac 105  Q
    ||||||| |||||||||||||||||||||| ||||| |||| | |||||||||| ||||||||| |||||||||||||| | ||||||    
T  35917847 aaaaagtaaagtttctaatgataaaattatcatttgaatcatttaaattatcaataattttaaaaatgcaactttaataccataacac 35917934  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 44789848 - 44789911
Alignment:
Q  183 tgtgaagaagatttccttcttagacttggccgaattttgatgataacaaattcatatcacaaaa 246  Q
    |||||||||||||||| |||||||||||||  |||||||||||||||||| ||| |||||||||    
T  44789848 tgtgaagaagatttccctcttagacttggcaaaattttgatgataacaaactcacatcacaaaa 44789911  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 374
Target Start/End: Complemental strand, 23153062 - 23152989
Alignment:
Q  301 ttcatagttatatttttgtaagtaaagtccttattttttatttatcattcttaatttatgcaacaagttagaat 374  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||||||| |||| ||||| ||||  |||||||    
T  23153062 ttcatagttatatttttgtcagtatggtccttattttttatttatcatttttaacttatggaacacattagaat 23152989  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 374
Target Start/End: Complemental strand, 23564319 - 23564246
Alignment:
Q  301 ttcatagttatatttttgtaagtaaagtccttattttttatttatcattcttaatttatgcaacaagttagaat 374  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||||||| |||| ||||| ||||  |||||||    
T  23564319 ttcatagttatatttttgtcagtatggtccttattttttatttatcatttttaacttatggaacacattagaat 23564246  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 375
Target Start/End: Complemental strand, 39614884 - 39614781
Alignment:
Q  271 ttgaagaatgaaaataatggaacttaaagcttcatagttatatttttgtaagtaaagtccttattttttatttatcattcttaatttatgcaacaagtta 370  Q
    |||||||||||| ||||| | |||||  |||||| ||||||||||||||||| | ||| ||||| ||| ||||||||||||||| ||||  ||||| |||    
T  39614884 ttgaagaatgaagataataggacttag-gcttcaaagttatatttttgtaaggatagttcttatctttgatttatcattcttaacttataaaacaattta 39614786  T
Q  371 gaata 375  Q
    |||||    
T  39614785 gaata 39614781  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 21546957 - 21546909
Alignment:
Q  183 tgtgaagaagatttccttcttagacttggccgaattttgatgataacaa 231  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||||||    
T  21546957 tgtgaagaagatttccttcttagatttggttgaattttgatgataacaa 21546909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 27155862 - 27155925
Alignment:
Q  183 tgtgaagaagatttccttcttagacttggccgaattttgatgataacaaattcatatcacaaaag 247  Q
    |||||||||||||||||||||||||||||| |  |||||||||||| ||| ||| ||||||||||    
T  27155862 tgtgaagaagatttccttcttagacttggctgggttttgatgataa-aaactcacatcacaaaag 27155925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 27024296 - 27024387
Alignment:
Q  17 aaaaaagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacacgta 108  Q
    ||||| ||||||||||||||||||||||||| ||  |||||| |||||||||| | ||||||||||||| |||||||||||||||| |||||    
T  27024296 aaaaaggtgaagtttctaatgataaaattatcatcaggatcagtcaaattatctacaattttaaagatgaaactttaatatcgtaaaacgta 27024387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 7713805 - 7713728
Alignment:
Q  66 tatcaaaaattttaaagatgcaactttaatatcgtaacacgtatg-----tacaccaaaaaattaatcataaccgcaa 138  Q
    |||||| ||||||||| |||||||||||||||||||||| |||||     |||||||||||| ||||| |||| ||||    
T  7713805 tatcaacaattttaaaaatgcaactttaatatcgtaacaagtatgaagcatacaccaaaaaactaatcctaactgcaa 7713728  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 31316509 - 31316452
Alignment:
Q  190 aagatttccttcttagacttggccgaattttgatgataacaaattcatatcacaaaag 247  Q
    ||||||| ||||||||||||||  |||||||||||||||||||| |  ||||||||||    
T  31316509 aagattttcttcttagacttggttgaattttgatgataacaaatgctcatcacaaaag 31316452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 42879661 - 42879725
Alignment:
Q  183 tgtgaagaagatttccttcttagacttggccgaattttgatgataacaaattcatatcacaaaag 247  Q
    ||||||||||||| |||||||||| ||||  |  |||||| ||||||||| ||| ||||||||||    
T  42879661 tgtgaagaagattcccttcttagatttggttgggttttgacgataacaaactcacatcacaaaag 42879725  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 37381599 - 37381511
Alignment:
Q  18 aaaaagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacacg 106  Q
    ||||||||||||||||||||| |||||||| || | ||||| |||| ||||| | |||||||||||| |||||||||||||||||||||    
T  37381599 aaaaagtgaagtttctaatgaaaaaattatcatctagatcagtcaagttatctacaattttaaagatacaactttaatatcgtaacacg 37381511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 48260817 - 48260733
Alignment:
Q  18 aaaaagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaa 102  Q
    ||||| |||||||| ||||||||||||||| ||  |||||| |||||||||| | |||||||||||| |||||||||||||||||    
T  48260817 aaaaaatgaagtttttaatgataaaattatcatccggatcagtcaaattatctacaattttaaagatacaactttaatatcgtaa 48260733  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 42694751 - 42694838
Alignment:
Q  18 aaaaagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacac 105  Q
    |||||||||||||| ||||||||| |||||||| || |||| | |||||||||| |||||||||||| ||| ||||||||| ||||||    
T  42694751 aaaaagtgaagtttataatgataagattataatctgaatcagttaaattatcaataattttaaagatccaattttaatatcctaacac 42694838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 21571308 - 21571244
Alignment:
Q  183 tgtgaagaagatttccttcttagacttggccgaattttgatgataacaaattcatatcacaaaag 247  Q
    |||||| ||||||||||||||||||||| | |||||||||||| || ||| ||| ||||||||||    
T  21571308 tgtgaaaaagatttccttcttagacttgactgaattttgatgacaataaactcacatcacaaaag 21571244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 10024211 - 10024248
Alignment:
Q  147 aatttataaaaattaagaggaaaagaaattgctatgtg 184  Q
    ||||||||||||| || |||||||||||||||||||||    
T  10024211 aatttataaaaatgaaaaggaaaagaaattgctatgtg 10024248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1619 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold1619
Description:

Target: scaffold1619; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 689 - 779
Alignment:
Q  18 aaaaagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacacgta 108  Q
    ||||||||||||||||||||| |||||||| || | ||||| |||||||||| | |||||| || || |||||||||||||||||||||||    
T  689 aaaaagtgaagtttctaatgaaaaaattatcatctcgatcagtcaaattatctacaattttgaatatacaactttaatatcgtaacacgta 779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 40147455 - 40147542
Alignment:
Q  18 aaaaagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacac 105  Q
    ||||| |||||||||||||||||||||||| |  || |||| | |||||||||| ||||||||| |||||||||||||| ||||||||    
T  40147455 aaaaaatgaagtttctaatgataaaattatcacctgaatcatttaaattatcaacaattttaaaaatgcaactttaataccgtaacac 40147542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 14139504 - 14139418
Alignment:
Q  18 aaaaagtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaaca 104  Q
    ||||||||||| || ||||||||||||||| ||  | |||| | ||||| |||| ||||||||||||||| ||||||||||||||||    
T  14139504 aaaaagtgaagcttttaatgataaaattatcatacgaatcagttaaattgtcaacaattttaaagatgcatctttaatatcgtaaca 14139418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 13767182 - 13767136
Alignment:
Q  62 aaattatcaaaaattttaaagatgcaactttaatatcgtaacacgta 108  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  13767182 aaattatcaaaaaatttaaagatgcaactttaatatcgtaatacgta 13767136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 25115454 - 25115407
Alignment:
Q  181 tgtgtgaagaagatttccttcttagacttggccgaattttgatgataa 228  Q
    ||||||||||| |||||||||||||||||||  || ||||||||||||    
T  25115454 tgtgtgaagaatatttccttcttagacttggttgagttttgatgataa 25115407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 32134880 - 32134948
Alignment:
Q  179 tatgtgtgaagaagatttccttcttagacttggccgaattttgatgataacaaattcatatcacaaaag 247  Q
    ||||||||||||| |||| ||||||| || |||  || |||||||||||||||| ||| |||| |||||    
T  32134880 tatgtgtgaagaatattttcttcttaaacatggttgagttttgatgataacaaactcacatcataaaag 32134948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 3379 - 3315
Alignment:
Q  183 tgtgaagaagatttccttcttagacttggccgaattttgatgataacaaattcatatcacaaaag 247  Q
    ||||||||||||| |||||||||| ||||  |  |||||| ||||||||| ||| ||||||||||    
T  3379 tgtgaagaagattcccttcttagatttggttgggttttgacgataacaaactcacatcacaaaag 3315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 60723 - 60640
Alignment:
Q  22 agtgaagtttctaatgataaaattataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacacgta 108  Q
    ||||||||||||||||| |||||||| ||   ||| | |||||||||| | |||||| || |||||||||   ||||||||||||||    
T  60723 agtgaagtttctaatgaaaaaattatcatcccgattagtcaaattatctacaattttgaatatgcaactt---tatcgtaacacgta 60640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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