View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_19 (Length: 449)
Name: NF1590_low_19
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 12827373 - 12827141
Alignment:
| Q |
22 |
agaggatgccggaggtagtggtggtgtggatttgtatgagattgattcaactgaagatgaaattgaggaagatatcgaagacgcaaatgaagatgatttg |
121 |
Q |
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| T |
12827373 |
agaggatgccggaggtagtggtggtgtggatttgtatgagattgattcaactgaagatgaaattgaggaagatattgaagacgcaaatgaagatgatttg |
12827274 |
T |
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| Q |
122 |
gttggtaaagcattgcagaagtgtgcgacgatttcggtggagttgaaaggggagttgtttggttcttctggtgcggtttgtgataggtattctgaagttg |
221 |
Q |
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| T |
12827273 |
gttggtaaagctttgcaaaagtgtgcgaggatttcggtggagttgaaaggggagttgtttggttcttctggtgcggtttgtgataggtattctgaagttg |
12827174 |
T |
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| Q |
222 |
aatcttcttcggttagaattgttactcaggtaa |
254 |
Q |
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| T |
12827173 |
aatcttcttcggttagaattgttactcaggtaa |
12827141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 329 - 428
Target Start/End: Complemental strand, 12827096 - 12826997
Alignment:
| Q |
329 |
aagtgtgattgattgtgtggttatttgtaggatgatgttgatgttgcttgtggttctgaggattcggattttcaaccgttgttaaagccgtatcagcttg |
428 |
Q |
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| T |
12827096 |
aagtgtgattgattgtgtggttatttgtaggatgatgttgatgttgcttgtggttctgaggattcggattttcaaccgttgttaaagccgtatcagcttg |
12826997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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