View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1590_low_20 (Length: 447)
Name: NF1590_low_20
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_20 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 14 - 430
Target Start/End: Complemental strand, 9999695 - 9999279
Alignment:
| Q |
14 |
caaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9999695 |
caaaggatcataatgagaatcaccaacattcattggtaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaac |
9999596 |
T |
|
| Q |
114 |
aaaacatccgcaacaccagaaccttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccgg |
213 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9999595 |
aaaacatcggcaacaccagaaccttcactaccaggaagccaatcatccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccgg |
9999496 |
T |
|
| Q |
214 |
tgattaacacaacgacacatttcactccgctgcatacattgtctatcgtttcatatccatgtccagaaattgttaagtttaagctgtcaccatttgtttc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
9999495 |
tgattaacacaacgacacatttcactccgctgcatacattgtctatcgtttcatatccatgtccagagattgttaagtttaagctgtcaccatttgtttc |
9999396 |
T |
|
| Q |
314 |
agcatatggtgtctctccaactatcacaattgcatatgaaaaatcattggattttacatagtctaatgaaggattctcctcgtagaataccttggtttct |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9999395 |
agcatatggtgtctctccaactatcacaattgcatatgaaaaatcattggattttacatagtctaatgaaggattctcctcgtagaataccttggtttct |
9999296 |
T |
|
| Q |
414 |
ttgtcaactgcgttttt |
430 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
9999295 |
ttgtcgactgcgttttt |
9999279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 14 - 426
Target Start/End: Complemental strand, 10005843 - 10005431
Alignment:
| Q |
14 |
caaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10005843 |
caaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaac |
10005744 |
T |
|
| Q |
114 |
aaaacatccgcaacaccagaaccttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccgg |
213 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10005743 |
aaaacatcggcaacaccagaaccttcactaccaggaagccaagcaaccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccgg |
10005644 |
T |
|
| Q |
214 |
tgattaacacaacgacacatttcactccgctgcatacattgtctatcgtttcatatccatgtccagaaattgttaagtttaagctgtcaccatttgtttc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10005643 |
tgattaacacaacgacacatttcactccgctgcatacattgtctatcgtttcatatccatgtccagagattgttaagtttaagctgtcaccatttgtttc |
10005544 |
T |
|
| Q |
314 |
agcatatggtgtctctccaactatcacaattgcatatgaaaaatcattggattttacatagtctaatgaaggattctcctcgtagaataccttggtttct |
413 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10005543 |
agcatatggtgtctctccaactaccacaattgcatatgaaaaatcattgaattttacataatctaatgaaggattctcctcgtagactaccttggtttct |
10005444 |
T |
|
| Q |
414 |
ttgtcaactgcgt |
426 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
10005443 |
ttgtcgactgcgt |
10005431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 430
Target Start/End: Complemental strand, 9992740 - 9992324
Alignment:
| Q |
14 |
caaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||| |
|
|
| T |
9992740 |
caaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtcctagcaagcttaccagtaaatccataatcaccaaac |
9992641 |
T |
|
| Q |
114 |
aaaacatccgcaacaccagaaccttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccgg |
213 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||| |||| || ||||| |||||||| | ||||||||||||||| ||| ||||||||| | |
|
|
| T |
9992640 |
aaaacatcagcaacaccagtaccttcactaccaggaagccaagcagcaacgagtccgtcaattttgttaagatatggttgtatggcaacaggtctaccag |
9992541 |
T |
|
| Q |
214 |
tgattaacacaacgacacatttcactccgctgcatacattgtctatcgtttcatatccatgtccagaaattgttaagtttaagctgtcaccatttgtttc |
313 |
Q |
| |
|
||| ||||||||||||||||||||||| || ||||||||||| ||| ||||| ||| | || |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
9992540 |
tgactaacacaacgacacatttcactctgccgcatacattgtttattgtttctgttccgttaccggaaattgttaagttcaagctgtcgccatttgtttc |
9992441 |
T |
|
| Q |
314 |
agcatatggtgtctctccaactatcacaattgcatatgaaaaatcattggattttacatagtctaatgaaggattctcctcgtagaataccttggtttct |
413 |
Q |
| |
|
||| ||||||||||||||||||| ||| | |||||| |||||||||||||||||||| ||||||| ||||||||||||||| |||| ||||||||||||| |
|
|
| T |
9992440 |
agcgtatggtgtctctccaactaccacgactgcatacgaaaaatcattggattttacgtagtctagtgaaggattctcctcatagactaccttggtttct |
9992341 |
T |
|
| Q |
414 |
ttgtcaactgcgttttt |
430 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
9992340 |
ttgtcaactgtgttttt |
9992324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 14 - 377
Target Start/End: Complemental strand, 10014184 - 10013821
Alignment:
| Q |
14 |
caaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaac |
113 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| || ||||||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| |
|
|
| T |
10014184 |
caaaggatcataatgacgatccccaacattcatcggtaactgatggacagtcttaaaccatgtccttgaaagcttaccagtaaatccataatcaccaaac |
10014085 |
T |
|
| Q |
114 |
aaaacatccgcaacaccagaaccttcactaccaggaagccaaccagccacaagtccttcaattttctcaagatatggttgtataacaataggtctaccgg |
213 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||| | || || ||||| ||||| || | |||| ||||||||||||||| |||||| || | |
|
|
| T |
10014084 |
aaaacatcagcaacaccagtaccttcactaccaggaagccaagccgcaacgagtccgtcaatgttgtgaagaaatggttgtataacaacaggtcttccag |
10013985 |
T |
|
| Q |
214 |
tgattaacacaacgacacatttcactccgctgcatacattgtctatcgtttcatatccatgtccagaaattgttaagtttaagctgtcaccatttgtttc |
313 |
Q |
| |
|
|||||| ||||| |||||||||||| ||| ||||||||| | || ||||| ||||||| ||| || ||| || |||||||||||||||| |||||| |
|
|
| T |
10013984 |
agattaagacaacaacacatttcactgcgccgcatacatttttgattgtttctattccatgtgcaggaagtgtcaaatttaagctgtcaccatctgtttc |
10013885 |
T |
|
| Q |
314 |
agcatatggtgtctctccaactatcacaattgcatatgaaaaatcattggattttacatagtct |
377 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10013884 |
agcatatggtttctctccaactaccacaattgcatatgaaaaaccattggattttacatagtct |
10013821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 33353239 - 33353383
Alignment:
| Q |
21 |
tcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaacat |
120 |
Q |
| |
|
|||||||||| ||| |||||||||||||| | ||||||||| | || |||||||| |||||||| || || || || |||||||||||||| ||||||| |
|
|
| T |
33353239 |
tcataatgaggatctccaacattcattggaagttgatcaacacttttgaaccatgttcttggaagctttcctgtgaaaccataatcaccaaataaaacat |
33353338 |
T |
|
| Q |
121 |
ccgcaacaccagaaccttcactaccaggaagccaaccagccacaa |
165 |
Q |
| |
|
| || ||||| ||||||||||| || ||||||||||| |||| |
|
|
| T |
33353339 |
cagccacaccttgtccttcactacctggtagccaaccagcaacaa |
33353383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 11244300 - 11244412
Alignment:
| Q |
18 |
ggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaaa |
117 |
Q |
| |
|
||||| || |||| ||| |||||||||||||| | ||||| |||| || ||||||||||||| ||||||||| || || ||||| |||||||| | || |
|
|
| T |
11244300 |
ggatcgtagtgaggatctccaacattcattgggagttgatcgacagatttgaaccatgtccttgcaagtttaccagtgaaaccatagtcaccaaaaagaa |
11244399 |
T |
|
| Q |
118 |
catccgcaacacc |
130 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
11244400 |
catctgccacacc |
11244412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 35994438 - 35994277
Alignment:
| Q |
17 |
aggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttaccggtaaatccataatcaccaaacaaa |
116 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| | ||| || || ||||| ||||||||||||| ||||| || || ||| || | |||||| | | | |
|
|
| T |
35994438 |
aggatcataatgtttatcgccaacattcattggaagctggtctactgtcttgaaccatgtccttgccagtttgccagtgaattcaaagtcaccatagaga |
35994339 |
T |
|
| Q |
117 |
acatccgcaacaccagaaccttcactaccaggaagccaaccagccacaagtccttcaatttt |
178 |
Q |
| |
|
|| || |||||||| |||||| | ||||||||||| ||||||||||| | |||||||| |
|
|
| T |
35994338 |
acgtcggcaacaccttggccttcagtgccaggaagccatgcagccacaagtgcatcaatttt |
35994277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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