View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_23 (Length: 436)
Name: NF1590_low_23
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 21017808 - 21018224
Alignment:
| Q |
1 |
acatatctaagcaaaataaaagtaaccttcccttcaaaaattagtaaaacgtaaagttttggtcattgaagaaactttcacaaaat-------------- |
86 |
Q |
| |
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|||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21017808 |
acatatctaagcaaaataaaagcaaccctcccttaaaaaattagtaaaacgtaaagttttggtcattgaagaaactttcacaaaatatcaataaaacaaa |
21017907 |
T |
|
| Q |
87 |
-atcaagtattgagaaaggaatgatgatacactaaataacgatgcttgagcgtatagaacatcgtgaagaaattaatgcatgccgcagtgtttaatgcag |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||| |
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| T |
21017908 |
tatcaagtattgagaaaggaatgatgatacactaaataatgatgcttgagcgtatagaacatattgaagaaattaatgcatgccgcagtgttgaatacag |
21018007 |
T |
|
| Q |
186 |
gatttaactaaaaatttgttcaacaactaaaaacatatttatagttaaaggaaaacctaccaaatcaagcaannnnnnnnnnnnnnnnnnnntggcaaga |
285 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21018008 |
gatttaactaaaaatttgttcaacaactaaaaacatatttatagttaaaggaaaacctaccaaatcaagcaacatcacatcatcatcatcattggcaaga |
21018107 |
T |
|
| Q |
286 |
cgtgctaggtcagaagccctcggtccagttattagttcaagaagcatcacaccatatgcaaaaacatcgatcttttctgaagaccttctagttaagagat |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21018108 |
cgtgctaggtcagaagccctcggtccagttattagttcaagaagcatcacaccatatgcaaaaacatcgatcttttctgaagaccttctagttaagagat |
21018207 |
T |
|
| Q |
386 |
actcaggtgctatatgc |
402 |
Q |
| |
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||||||||||||||||| |
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| T |
21018208 |
actcaggtgctatatgc |
21018224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 280 - 416
Target Start/End: Complemental strand, 1436200 - 1436064
Alignment:
| Q |
280 |
gcaagacgtgctaggtcagaagccctcggtccagttattagttcaagaagcatcacaccatatgcaaaaacatcgatcttttctgaagaccttctagtta |
379 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
1436200 |
gcaagacgtgctagatcagaagccctcggtccagttattagttcaagaagcatcacaccatatgcaaaaacatcggtcttttctgaagaccttccagtta |
1436101 |
T |
|
| Q |
380 |
agagatactcaggtgctatatgcccaaccgtaccaaa |
416 |
Q |
| |
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||||||| ||||||||||||||||||| ||||||||| |
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| T |
1436100 |
agagatattcaggtgctatatgcccaatcgtaccaaa |
1436064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 278 - 414
Target Start/End: Complemental strand, 1429592 - 1429456
Alignment:
| Q |
278 |
tggcaagacgtgctaggtcagaagccctcggtccagttattagttcaagaagcatcacaccatatgcaaaaacatcgatcttttctgaagaccttctagt |
377 |
Q |
| |
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|||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||| ||| |
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| T |
1429592 |
tggcaagacgtgctagatcaaaagccctttgtccagttattagttcaagaagcatcacaccatatccaaaaacatcagtcttttctgaagactttccagt |
1429493 |
T |
|
| Q |
378 |
taagagatactcaggtgctatatgcccaaccgtacca |
414 |
Q |
| |
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| | || ||||||||||||||||| |||| ||||||| |
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| T |
1429492 |
tgacaggtactcaggtgctatatgtccaatcgtacca |
1429456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 279 - 406
Target Start/End: Complemental strand, 1449024 - 1448897
Alignment:
| Q |
279 |
ggcaagacgtgctaggtcagaagccctcggtccagttattagttcaagaagcatcacaccatatgcaaaaacatcgatcttttctgaagaccttctagtt |
378 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| | ||||||||||||||| ||||||| |||||||||| |||||||||||||| ||| ||| |
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| T |
1449024 |
ggcaagacgtgctaggtcaaaagccctctgtccagttgtcagttcaagaagcatcgtaccatatccaaaaacatcagtcttttctgaagactttccggtt |
1448925 |
T |
|
| Q |
379 |
aagagatactcaggtgctatatgcccaa |
406 |
Q |
| |
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| || |||||||||| ||||||||||| |
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| T |
1448924 |
gacaggtactcaggtggtatatgcccaa |
1448897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 1429811 - 1429725
Alignment:
| Q |
83 |
aaatatcaagtattgagaaaggaatgatgatacactaaataacgatgcttgagcgtatagaacatcgtgaagaaattaatgcatgcc |
169 |
Q |
| |
|
|||||| |||||||||| |||| || ||||||||||| |||| ||||||||||| |||||||||| ||||||| || |||||||||| |
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|
| T |
1429811 |
aaatattaagtattgagcaagggataatgatacactagataatgatgcttgagcatatagaacattgtgaagagatcaatgcatgcc |
1429725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 279 - 406
Target Start/End: Complemental strand, 1441620 - 1441493
Alignment:
| Q |
279 |
ggcaagacgtgctaggtcagaagccctcggtccagttattagttcaagaagcatcacaccatatgcaaaaacatcgatcttttctgaagaccttctagtt |
378 |
Q |
| |
|
||||||||||||||| ||| |||||||| ||||||| | ||||| ||||||||| |||||| |||||||||| |||||||||||||| ||| ||| |
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| T |
1441620 |
ggcaagacgtgctagatcaaaagccctctttccagttgtcagttctagaagcatcgtgccatatccaaaaacatcagtcttttctgaagactttccggtt |
1441521 |
T |
|
| Q |
379 |
aagagatactcaggtgctatatgcccaa |
406 |
Q |
| |
|
| || |||||||| | ||||||||||| |
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|
| T |
1441520 |
gacaggtactcagggggtatatgcccaa |
1441493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 299 - 406
Target Start/End: Complemental strand, 1455760 - 1455653
Alignment:
| Q |
299 |
aagccctcggtccagttattagttcaagaagcatcacaccatatgcaaaaacatcgatcttttctgaagaccttctagttaagagatactcaggtgctat |
398 |
Q |
| |
|
|||| ||| |||||||||||||||||| |||||||| ||||||| || ||||||| |||||||||||||| ||| ||| | || ||||| |||||||| |
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| T |
1455760 |
aagcactctgtccagttattagttcaaaaagcatcataccatatccataaacatcagtcttttctgaagactttcctgttgacaggtactcgggtgctat |
1455661 |
T |
|
| Q |
399 |
atgcccaa |
406 |
Q |
| |
|
|| ||||| |
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|
| T |
1455660 |
atacccaa |
1455653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 1436273 - 1436217
Alignment:
| Q |
201 |
ttgttcaacaactaaaaacatatttatagttaaaggaaaacctaccaaatcaagcaa |
257 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||||||||||||||||| |||||||||| |
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|
| T |
1436273 |
ttgttcaactactaatgacatatttaaagttaaaggaaaacctacccaatcaagcaa |
1436217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 1436348 - 1436299
Alignment:
| Q |
151 |
gaagaaattaatgcatgccgcagtgtttaatgcaggatttaactaaaaat |
200 |
Q |
| |
|
||||||||||||||||||| ||||||| | |||| |||||||||||||| |
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|
| T |
1436348 |
gaagaaattaatgcatgccacagtgttggaggcagaatttaactaaaaat |
1436299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 1441773 - 1441716
Alignment:
| Q |
109 |
atgatacactaaataacgatgcttgagcgtatagaacatcgtgaagaaattaatgcatgc |
168 |
Q |
| |
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|||||||||||||||| ||||||||| ||||||||||| |||||| |||||| ||||| |
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|
| T |
1441773 |
atgatacactaaataatgatgcttga--gtatagaacattatgaagagattaattcatgc |
1441716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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