View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_low_26 (Length: 429)

Name: NF1590_low_26
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_low_26
NF1590_low_26
[»] chr7 (29 HSPs)
chr7 (33-411)||(24609806-24610183)
chr7 (295-374)||(11344027-11344106)
chr7 (295-374)||(48930925-48931004)
chr7 (295-374)||(35133165-35133244)
chr7 (298-374)||(28476444-28476520)
chr7 (295-374)||(25068275-25068354)
chr7 (299-356)||(38880422-38880479)
chr7 (291-374)||(3876042-3876125)
chr7 (295-359)||(4999823-4999887)
chr7 (296-367)||(25255452-25255521)
chr7 (295-347)||(31481892-31481944)
chr7 (291-330)||(3222906-3222945)
chr7 (295-365)||(38439934-38440004)
chr7 (296-349)||(11654043-11654096)
chr7 (295-364)||(24069195-24069264)
chr7 (296-365)||(46822538-46822607)
chr7 (292-327)||(37890165-37890200)
chr7 (285-328)||(40741822-40741865)
chr7 (285-331)||(2407850-2407896)
chr7 (296-326)||(8169279-8169309)
chr7 (285-335)||(25286983-25287033)
chr7 (291-337)||(26017332-26017377)
chr7 (291-328)||(10574789-10574826)
chr7 (291-328)||(14733741-14733778)
chr7 (291-336)||(30992498-30992542)
chr7 (295-368)||(46821546-46821619)
chr7 (291-327)||(32312925-32312961)
chr7 (291-327)||(34893511-34893547)
chr7 (292-328)||(35261553-35261589)
[»] chr8 (38 HSPs)
chr8 (290-374)||(14585895-14585979)
chr8 (295-359)||(18890491-18890555)
chr8 (298-365)||(8868035-8868102)
chr8 (295-374)||(42046439-42046518)
chr8 (285-358)||(19443846-19443919)
chr8 (295-359)||(34610069-34610133)
chr8 (291-374)||(26468938-26469021)
chr8 (295-374)||(43833788-43833867)
chr8 (296-374)||(41896735-41896812)
chr8 (285-326)||(34680666-34680707)
chr8 (295-359)||(18846261-18846325)
chr8 (291-337)||(8054482-8054527)
chr8 (285-330)||(15344560-15344605)
chr8 (285-330)||(15433625-15433670)
chr8 (285-330)||(15524929-15524974)
chr8 (295-332)||(40618876-40618913)
chr8 (296-340)||(470951-470995)
chr8 (295-335)||(3673687-3673727)
chr8 (291-330)||(1236497-1236536)
chr8 (285-328)||(12654326-12654369)
chr8 (285-332)||(16247017-16247064)
chr8 (285-332)||(27498159-27498206)
chr8 (291-337)||(5457466-5457511)
chr8 (276-313)||(11267286-11267324)
chr8 (296-337)||(589029-589069)
chr8 (296-337)||(624853-624893)
chr8 (291-332)||(6314913-6314954)
chr8 (291-328)||(9799685-9799722)
chr8 (295-332)||(28086615-28086652)
chr8 (291-328)||(30568120-30568157)
chr8 (291-327)||(7579523-7579559)
chr8 (296-328)||(21238040-21238072)
chr8 (291-327)||(28296783-28296819)
chr8 (291-327)||(31712748-31712784)
chr8 (291-359)||(31720643-31720711)
chr8 (295-335)||(40211103-40211143)
chr8 (279-323)||(40490202-40490246)
chr8 (295-335)||(41684619-41684659)
[»] chr4 (30 HSPs)
chr4 (295-373)||(33332384-33332462)
chr4 (291-374)||(6155010-6155093)
chr4 (285-366)||(36161955-36162036)
chr4 (285-365)||(43853688-43853768)
chr4 (306-373)||(7393435-7393502)
chr4 (285-374)||(27652179-27652268)
chr4 (295-359)||(18936033-18936097)
chr4 (295-359)||(36194959-36195023)
chr4 (286-366)||(52933734-52933814)
chr4 (295-374)||(1621305-1621384)
chr4 (295-359)||(37465724-37465788)
chr4 (295-368)||(42032323-42032396)
chr4 (306-374)||(48350999-48351067)
chr4 (291-373)||(31891073-31891159)
chr4 (291-336)||(46716568-46716612)
chr4 (295-327)||(28857672-28857704)
chr4 (285-336)||(12493595-12493646)
chr4 (291-326)||(35395465-35395500)
chr4 (291-336)||(9549828-9549872)
chr4 (291-372)||(9714148-9714228)
chr4 (291-332)||(13634382-13634423)
chr4 (295-336)||(14542190-14542230)
chr4 (291-336)||(44374949-44374993)
chr4 (285-330)||(51888007-51888052)
chr4 (291-320)||(52555425-52555454)
chr4 (291-327)||(24100558-24100594)
chr4 (294-326)||(38545830-38545862)
chr4 (291-327)||(38943817-38943853)
chr4 (295-335)||(52979008-52979048)
chr4 (291-327)||(56236491-56236527)
[»] chr3 (44 HSPs)
chr3 (291-359)||(16235656-16235724)
chr3 (291-374)||(53508437-53508520)
chr3 (295-372)||(41818432-41818509)
chr3 (298-374)||(42460964-42461040)
chr3 (295-374)||(21289608-21289687)
chr3 (295-359)||(8914942-8915006)
chr3 (295-359)||(27706020-27706084)
chr3 (295-359)||(51923957-51924021)
chr3 (303-374)||(27856380-27856451)
chr3 (291-330)||(50194137-50194176)
chr3 (302-373)||(38142741-38142814)
chr3 (291-359)||(3085092-3085160)
chr3 (295-359)||(7546846-7546910)
chr3 (295-374)||(51487297-51487381)
chr3 (296-339)||(14859734-14859777)
chr3 (291-365)||(52115807-52115881)
chr3 (291-328)||(628725-628762)
chr3 (285-326)||(4822057-4822098)
chr3 (291-328)||(32881160-32881197)
chr3 (291-331)||(20464766-20464806)
chr3 (291-327)||(35501443-35501479)
chr3 (279-318)||(25460776-25460815)
chr3 (285-328)||(35175653-35175696)
chr3 (296-358)||(1650176-1650238)
chr3 (285-335)||(36910561-36910611)
chr3 (295-332)||(9797339-9797376)
chr3 (291-328)||(17238058-17238095)
chr3 (291-328)||(20252059-20252096)
chr3 (291-332)||(21533610-21533651)
chr3 (295-332)||(46304326-46304363)
chr3 (291-332)||(47041849-47041890)
chr3 (291-332)||(48650535-48650576)
chr3 (295-348)||(55061754-55061807)
chr3 (295-335)||(7448719-7448759)
chr3 (295-335)||(7456861-7456901)
chr3 (294-326)||(7658422-7658454)
chr3 (295-327)||(10977647-10977679)
chr3 (295-323)||(11225762-11225790)
chr3 (291-327)||(25939170-25939206)
chr3 (304-348)||(26715936-26715980)
chr3 (291-327)||(33076689-33076725)
chr3 (291-327)||(36540371-36540407)
chr3 (291-327)||(36623931-36623967)
chr3 (291-327)||(48652117-48652153)
[»] scaffold0021 (1 HSPs)
scaffold0021 (291-366)||(4370-4445)
[»] chr6 (22 HSPs)
chr6 (291-374)||(30776880-30776963)
chr6 (295-374)||(8102943-8103022)
chr6 (296-364)||(14802055-14802123)
chr6 (291-374)||(679325-679408)
chr6 (295-373)||(1523621-1523699)
chr6 (291-359)||(31851682-31851750)
chr6 (295-352)||(22571628-22571685)
chr6 (302-374)||(546248-546320)
chr6 (291-347)||(10084942-10084998)
chr6 (285-332)||(32060124-32060171)
chr6 (285-326)||(1450531-1450572)
chr6 (296-365)||(9380249-9380318)
chr6 (296-332)||(29744483-29744519)
chr6 (295-330)||(31297069-31297104)
chr6 (312-374)||(6957358-6957420)
chr6 (295-337)||(20845408-20845449)
chr6 (285-331)||(34185489-34185535)
chr6 (291-332)||(606452-606493)
chr6 (295-332)||(14174876-14174913)
chr6 (295-332)||(14179412-14179449)
chr6 (370-410)||(6957228-6957268)
chr6 (291-327)||(14731030-14731066)
[»] chr5 (23 HSPs)
chr5 (295-374)||(2979100-2979179)
chr5 (291-359)||(35920786-35920854)
chr5 (295-374)||(14211442-14211521)
chr5 (296-374)||(19103262-19103340)
chr5 (285-374)||(28540690-28540779)
chr5 (285-347)||(16758781-16758843)
chr5 (296-374)||(24874744-24874822)
chr5 (297-359)||(39567500-39567562)
chr5 (291-374)||(19121127-19121210)
chr5 (291-328)||(15710947-15710984)
chr5 (285-326)||(36057106-36057147)
chr5 (291-331)||(8088014-8088054)
chr5 (291-326)||(28423710-28423745)
chr5 (284-327)||(33486236-33486279)
chr5 (285-319)||(12628188-12628222)
chr5 (291-336)||(5378698-5378742)
chr5 (295-328)||(8984794-8984827)
chr5 (291-324)||(26905309-26905342)
chr5 (291-320)||(34866843-34866872)
chr5 (291-327)||(17218127-17218163)
chr5 (295-335)||(24229589-24229629)
chr5 (291-327)||(40775165-40775201)
chr5 (292-336)||(41358430-41358473)
[»] chr2 (35 HSPs)
chr2 (295-374)||(10237011-10237090)
chr2 (291-374)||(14955755-14955838)
chr2 (296-374)||(3309171-3309249)
chr2 (295-359)||(19595694-19595758)
chr2 (291-374)||(14416381-14416464)
chr2 (298-365)||(16376216-16376283)
chr2 (295-365)||(6358676-6358746)
chr2 (302-359)||(3460527-3460584)
chr2 (295-359)||(3465576-3465640)
chr2 (291-330)||(32448419-32448458)
chr2 (285-359)||(12553965-12554039)
chr2 (300-366)||(18107550-18107616)
chr2 (291-365)||(19598074-19598148)
chr2 (296-374)||(34128480-34128558)
chr2 (285-330)||(17248944-17248989)
chr2 (295-363)||(32519026-32519096)
chr2 (295-330)||(37994542-37994577)
chr2 (295-337)||(5754698-5754739)
chr2 (285-335)||(30399825-30399875)
chr2 (291-332)||(1415814-1415855)
chr2 (291-332)||(1421932-1421973)
chr2 (291-328)||(11550340-11550377)
chr2 (291-336)||(11931268-11931312)
chr2 (285-326)||(24461702-24461743)
chr2 (291-328)||(30923259-30923296)
chr2 (295-360)||(32092140-32092205)
chr2 (291-328)||(32197536-32197573)
chr2 (295-328)||(37884056-37884089)
chr2 (291-327)||(4878408-4878444)
chr2 (291-327)||(12366272-12366308)
chr2 (291-327)||(15920278-15920314)
chr2 (295-327)||(18089076-18089108)
chr2 (291-327)||(18141155-18141191)
chr2 (295-327)||(26491705-26491737)
chr2 (295-374)||(28871585-28871662)
[»] chr1 (31 HSPs)
chr1 (295-373)||(48750405-48750483)
chr1 (279-330)||(19061160-19061211)
chr1 (295-374)||(36775504-36775583)
chr1 (291-362)||(31692257-31692328)
chr1 (295-348)||(16162074-16162127)
chr1 (295-358)||(40163235-40163298)
chr1 (285-332)||(44915889-44915936)
chr1 (294-365)||(50616468-50616539)
chr1 (294-365)||(50624295-50624366)
chr1 (300-374)||(13075455-13075529)
chr1 (295-373)||(41994684-41994762)
chr1 (295-332)||(39888432-39888469)
chr1 (291-327)||(11121380-11121416)
chr1 (291-327)||(13969314-13969350)
chr1 (291-327)||(30853621-30853657)
chr1 (295-335)||(50377570-50377610)
chr1 (291-330)||(24583201-24583240)
chr1 (291-330)||(24583397-24583436)
chr1 (285-367)||(45789766-45789846)
chr1 (295-330)||(47133154-47133189)
chr1 (297-366)||(25564225-25564294)
chr1 (295-332)||(26535586-26535623)
chr1 (276-364)||(34479643-34479729)
chr1 (291-328)||(38646987-38647024)
chr1 (291-328)||(49648660-49648697)
chr1 (291-336)||(49652231-49652275)
chr1 (291-327)||(8893696-8893732)
chr1 (291-327)||(12967407-12967443)
chr1 (291-327)||(26771510-26771546)
chr1 (291-327)||(34659315-34659351)
chr1 (291-327)||(46589552-46589588)
[»] scaffold0039 (2 HSPs)
scaffold0039 (285-358)||(93338-93411)
scaffold0039 (295-328)||(53206-53239)
[»] scaffold0888 (1 HSPs)
scaffold0888 (295-374)||(1472-1551)
[»] scaffold0015 (1 HSPs)
scaffold0015 (295-367)||(3839-3911)
[»] scaffold0121 (1 HSPs)
scaffold0121 (285-332)||(31069-31116)
[»] scaffold0042 (1 HSPs)
scaffold0042 (285-326)||(92292-92333)
[»] scaffold0157 (1 HSPs)
scaffold0157 (285-336)||(26831-26882)
[»] scaffold0012 (1 HSPs)
scaffold0012 (291-325)||(245035-245069)
[»] scaffold0209 (1 HSPs)
scaffold0209 (296-337)||(30290-30330)
[»] scaffold0146 (1 HSPs)
scaffold0146 (291-328)||(16104-16141)
[»] scaffold0064 (1 HSPs)
scaffold0064 (309-373)||(18891-18955)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 33 - 411
Target Start/End: Original strand, 24609806 - 24610183
Alignment:
Q  33 tttttctgttaatatgataatgtcagatcagttagcatgtgctatgatctcagaacctgcaactcacattttattttgttaaaattgatagatagagtga 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24609806 tttttctgttaatatgataatgtcagatcagttagcatgtgctatgatctcagaacctgcaactcacattttattttgttaaaattgatagatagagtga 24609905  T
Q  133 taaatatcaaagttgaacataagatattataattaattctaagaatttctaactgctgattgatatgttaaaaaagattaaagcaaactaacacgtcact 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24609906 taaatatcaaagttgaacataagatattataattaattctaagaatttctaactggtgattgatatgttaaaaaagattaaagcaaactaacacgtcact 24610005  T
Q  233 agcaatgtttattattgtgttagtgcaaagttaata-nnnnnnngacaaaaataaaatgaaatgatattcattcattcaaattgatataatacatcagat 331  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||     ||||||||||||||||||||||||||||||||||||||| |    
T  24610006 agcaatgtttattattgtgttagtgcaaagttaatattttttttgacaaaaata-----aaatgatattcattcattcaaattgatataatacatcaggt 24610100  T
Q  332 ata----ataatatgatcaatatcgctaaaaatgtaaaggttgaatcaacaacgttgaagcccaaatcattgattgaatctgtg 411  Q
    |||    |||||||||| |||||| || ||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24610101 ataatatataatatgat-aatatcactgaaaacataaaggttgaatcaacaacgttgaaacccaaatcattgattgaatctgtg 24610183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 374
Target Start/End: Complemental strand, 11344106 - 11344027
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||||||||| ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||| | ||||||    
T  11344106 gatattcatttattcaaattgatataatacatcagatacaataacatgatcaacatcgctaaaaacgtaaatgatgaatc 11344027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 374
Target Start/End: Complemental strand, 48931004 - 48930925
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||||||||||||| ||||||||| ||||||||||| | ||||| |||||||||||||||||||| ||| ||||||||||    
T  48931004 gatattcattcatttaaattgatagaatacatcagagacaataacatgatcaatatcgctaaaaacgtataggttgaatc 48930925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 374
Target Start/End: Complemental strand, 35133244 - 35133165
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||||||||||||||||||||||| ||||||||||| | ||||| ||||||||||||| |||||| ||| ||| ||||||    
T  35133244 gatattcattcattcaaattgatagaatacatcagagacaataacatgatcaatatcgttaaaaacgtatagggtgaatc 35133165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 374
Target Start/End: Complemental strand, 28476520 - 28476444
Alignment:
Q  298 attcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    ||||||||||||| ||||||| ||||||||||| ||||||| ||||||||||| |||||||| ||||| | ||||||    
T  28476520 attcattcattcatattgatagaatacatcagagataataacatgatcaatattgctaaaaacgtaaatggtgaatc 28476444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 295 - 374
Target Start/End: Complemental strand, 25068354 - 25068275
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    ||||||||||| |||||||||||| ||||||||||| | ||||| || ||||||||||||||||| ||||| | ||||||    
T  25068354 gatattcattctttcaaattgatagaatacatcagaaacaataacatcatcaatatcgctaaaaacgtaaatggtgaatc 25068275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 38880422 - 38880479
Alignment:
Q  299 ttcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaa 356  Q
    |||||| |||||||||| || ||||||||||||||||||| |||||||||||||||||    
T  38880422 ttcatttattcaaattgttagaatacatcagatataataacatgatcaatatcgctaa 38880479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 374
Target Start/End: Original strand, 3876042 - 3876125
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    ||||||||||| ||| |||||||||||| ||||||||| ||| ||||| ||||||||||||  |||||| ||||| | ||||||    
T  3876042 aaatgatattctttcgttcaaattgatagaatacatcaaatacaataacatgatcaatatcattaaaaacgtaaatgatgaatc 3876125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 4999823 - 4999887
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    |||||||||||||||||||| |||||||| |||||||| ||||| || ||||| |||| ||||||    
T  4999823 gatattcattcattcaaattaatataatatatcagatacaataacatcatcaacatcgataaaaa 4999887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 25255521 - 25255452
Alignment:
Q  296 atattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaagg 367  Q
    ||||||||||||||||||||| |   ||||||| ||||||||| ||| |||||||||||||||| |||||||    
T  25255521 atattcattcattcaaattgagag--tacatcaaatataataacatgttcaatatcgctaaaaacgtaaagg 25255452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 31481892 - 31481944
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaa 347  Q
    |||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||    
T  31481892 gatattcattcattcaaattgatagaatacatcatatacaataacatgatcaa 31481944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 3222906 - 3222945
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcaga 330  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  3222906 aaatgatattcattcatttaaattgatataatacatcaga 3222945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 365
Target Start/End: Complemental strand, 38440004 - 38439934
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaa 365  Q
    ||||| |||||||| |||||||||||||| ||| |||| ||||  |||||||| ||| |||||||||||||    
T  38440004 gatatgcattcatttaaattgatataatatatctgatacaatatcatgatcaacatcactaaaaatgtaaa 38439934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 11654096 - 11654043
Alignment:
Q  296 atattcattcattcaaattgatataatacatcagatataataatatgatcaata 349  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||| || |||||||    
T  11654096 atattcattcattcaaattgatagaatacatcaaatacaataacatcatcaata 11654043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 364
Target Start/End: Original strand, 24069195 - 24069264
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaa 364  Q
    |||||||||| |||||||| |||| ||||| ||||||| ||||| || ||||| ||||||||||| ||||    
T  24069195 gatattcattgattcaaatcgatagaatacctcagataaaataacataatcaacatcgctaaaaacgtaa 24069264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 46822538 - 46822607
Alignment:
Q  296 atattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaa 365  Q
    |||| |||||||||||||||||| ||| ||| ||||| ||||| |||||||| ||||||| ||| |||||    
T  46822538 atatccattcattcaaattgatagaatgcattagatacaataacatgatcaacatcgctacaaacgtaaa 46822607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 327
Target Start/End: Original strand, 37890165 - 37890200
Alignment:
Q  292 aatgatattcattcattcaaattgatataatacatc 327  Q
    ||||||||||||||||||||||||||||| ||||||    
T  37890165 aatgatattcattcattcaaattgatatagtacatc 37890200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 328
Target Start/End: Complemental strand, 40741865 - 40741822
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatca 328  Q
    ||||| |||||||||| ||||||||||||||||||| |||||||    
T  40741865 aaaataaaatgatattaattcattcaaattgatatagtacatca 40741822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 2407896 - 2407850
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagat 331  Q
    ||||| ||| |||||||||||||| ||||||||| ||||||||||||    
T  2407896 aaaattaaaagatattcattcatttaaattgatagaatacatcagat 2407850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 326
Target Start/End: Original strand, 8169279 - 8169309
Alignment:
Q  296 atattcattcattcaaattgatataatacat 326  Q
    |||||||||||||||||||||||||||||||    
T  8169279 atattcattcattcaaattgatataatacat 8169309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 25286983 - 25287033
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagatataa 335  Q
    ||||| ||| |||||| ||||||||||||||||| | ||||||||||||||    
T  25286983 aaaataaaacgatatttattcattcaaattgatagagtacatcagatataa 25287033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 337
Target Start/End: Original strand, 26017332 - 26017377
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataata 337  Q
    |||||||||||||||||||||||||||| | |||||| |||||||||    
T  26017332 aaatgatattcattcattcaaattgatagagtacatc-gatataata 26017377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 10574826 - 10574789
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatca 328  Q
    |||||||||||||||||||||||||||| | |||||||    
T  10574826 aaatgatattcattcattcaaattgatagagtacatca 10574789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 14733741 - 14733778
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatca 328  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  14733741 aaatgacattcattcattcaaattgatatgatacatca 14733778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 30992498 - 30992542
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataat 336  Q
    |||||||||||||||||||||||||||| | |||||| ||||||||    
T  30992498 aaatgatattcattcattcaaattgatagagtacatc-gatataat 30992542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 46821546 - 46821619
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggt 368  Q
    |||||||||||||| ||||| ||| |||| |||| ||  ||||| |||||||| |||| |||||| ||||||||    
T  46821546 gatattcattcatttaaattaatagaatatatcatatgcaataacatgatcaacatcgttaaaaacgtaaaggt 46821619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 32312961 - 32312925
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  32312961 aaatgatattcattcattcaaattgatagagtacatc 32312925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 34893547 - 34893511
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  34893547 aaatgatattcattcattcaaattgatagagtacatc 34893511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 35261589 - 35261553
Alignment:
Q  292 aatgatattcattcattcaaattgatataatacatca 328  Q
    ||||||||||||||||||||||||||| | |||||||    
T  35261589 aatgatattcattcattcaaattgatagagtacatca 35261553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 290 - 374
Target Start/End: Complemental strand, 14585979 - 14585895
Alignment:
Q  290 gaaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||| |||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| ||| ||| ||||||    
T  14585979 gaaaggatattcattcattcaaattgatagaatacatcagagataataacatgatcaatatcgctaaaaacgtatagggtgaatc 14585895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 18890491 - 18890555
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    |||||||||||||||||||||||| ||||||||||| | ||||| ||||| ||||||||||||||    
T  18890491 gatattcattcattcaaattgatagaatacatcagagacaataacatgattaatatcgctaaaaa 18890555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 8868102 - 8868035
Alignment:
Q  298 attcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaa 365  Q
    ||||||||||||||||||||| ||||||||||||| ||||| |||||||| || |||||||| |||||    
T  8868102 attcattcattcaaattgatagaatacatcagatacaataacatgatcaacattgctaaaaacgtaaa 8868035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 295 - 374
Target Start/End: Complemental strand, 42046518 - 42046439
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    ||||||||||||||||||| |||| ||||||||||  | ||||| |||||||||||||||||||| ||| ||| ||||||    
T  42046518 gatattcattcattcaaatcgatagaatacatcagtgacaataacatgatcaatatcgctaaaaacgtatagggtgaatc 42046439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 358
Target Start/End: Original strand, 19443846 - 19443919
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaa 358  Q
    ||||| ||| |||||||||||||||||||||||| | ||||||||||||||||| ||| |||| |||| |||||    
T  19443846 aaaataaaacgatattcattcattcaaattgatagagtacatcagatataataacatgttcaacatcgttaaaa 19443919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 34610133 - 34610069
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    |||||| ||||||||||||||||||||||||||||||| ||||| || || ||||| ||||||||    
T  34610133 gatatttattcattcaaattgatataatacatcagatacaataacatcattaatattgctaaaaa 34610069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 374
Target Start/End: Original strand, 26468938 - 26469021
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||||||||||||| ||||||||| || |||||||||| ||||||||| ||||| || || |||||||| ||||| | ||||||    
T  26468938 aaatgatattcatttattcaaattaatgtaatacatcatatataataacatgattaacattgctaaaaacgtaaatggtgaatc 26469021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 374
Target Start/End: Original strand, 43833788 - 43833867
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    ||||||||| || ||||||||||| ||||||||| | | ||||| |||||||||||||||||||| ||||| | ||||||    
T  43833788 gatattcatccaatcaaattgatagaatacatcaaagacaataacatgatcaatatcgctaaaaaagtaaatggtgaatc 43833867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 374
Target Start/End: Complemental strand, 41896812 - 41896735
Alignment:
Q  296 atattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    ||||||||||||||||||||||| |||||||||||   ||||| ||||||||||| |||||||| ||| ||| ||||||    
T  41896812 atattcattcattcaaattgatagaatacatcaga-gcaataacatgatcaatattgctaaaaacgtatagggtgaatc 41896735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 34680666 - 34680707
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacat 326  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  34680666 aaaataaaatgatattcattcattcaaattgatataatacat 34680707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 18846261 - 18846325
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    |||||||||||||| || |||||||||||||||||||| |||||  ||||||| ||| |||||||    
T  18846261 gatattcattcatttaatttgatataatacatcagatacaataacttgatcaacatcactaaaaa 18846325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 337
Target Start/End: Original strand, 8054482 - 8054527
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataata 337  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||    
T  8054482 aaatgatattcattcattcaaattgatagaatacatc-gatataata 8054527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 15344605 - 15344560
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcaga 330  Q
    ||||| |||||||||| ||||||||||||||||| |||||||||||    
T  15344605 aaaataaaatgatatttattcattcaaattgatagaatacatcaga 15344560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 15433670 - 15433625
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcaga 330  Q
    ||||| |||||||||| ||||||||||||||||| |||||||||||    
T  15433670 aaaataaaatgatatttattcattcaaattgatagaatacatcaga 15433625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 15524974 - 15524929
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcaga 330  Q
    ||||| |||||||||| ||||||||||||||||| |||||||||||    
T  15524974 aaaataaaatgatatttattcattcaaattgatagaatacatcaga 15524929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 40618876 - 40618913
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagata 332  Q
    |||||||||||||||||||||||| |||||||||||||    
T  40618876 gatattcattcattcaaattgatagaatacatcagata 40618913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 470951 - 470995
Alignment:
Q  296 atattcattcattcaaattgatataatacatcagatataataata 340  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||    
T  470951 atattcattcatttaaattgatagaatacatcagatacaataata 470995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 3673727 - 3673687
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataa 335  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  3673727 gatattcattcattcaaattgatataatacactagatataa 3673687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 1236497 - 1236536
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcaga 330  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  1236497 aaatgatattcattcattcaaatcgatagaatacatcaga 1236536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 328
Target Start/End: Complemental strand, 12654369 - 12654326
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatca 328  Q
    ||||| |||||||||| |||||||||||| ||||||||||||||    
T  12654369 aaaataaaatgatatttattcattcaaatcgatataatacatca 12654326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 16247017 - 16247064
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagata 332  Q
    ||||| |||||||||||||| ||||||||||||  |||||||||||||    
T  16247017 aaaataaaatgatattcatttattcaaattgatggaatacatcagata 16247064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 27498159 - 27498206
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagata 332  Q
    ||||| |||| ||||||||||||||||||||||| | |||||||||||    
T  27498159 aaaataaaataatattcattcattcaaattgatagagtacatcagata 27498206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 337
Target Start/End: Complemental strand, 5457511 - 5457466
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataata 337  Q
    |||||||||||||||||||||||||||| | |||||| |||||||||    
T  5457511 aaatgatattcattcattcaaattgatagagtacatc-gatataata 5457466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 11267324 - 11267286
Alignment:
Q  276 gacaaaaataaaatgaaa-tgatattcattcattcaaat 313  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  11267324 gacaaaaataaaatgaaaatgatattcattcattcaaat 11267286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 589029 - 589069
Alignment:
Q  296 atattcattcattcaaattgatataatacatcagatataata 337  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  589029 atattcattcattcaaattgataaaatacatc-gatataata 589069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 624893 - 624853
Alignment:
Q  296 atattcattcattcaaattgatataatacatcagatataata 337  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  624893 atattcattcattcaaattgataaaatacatc-gatataata 624853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 6314954 - 6314913
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagata 332  Q
    |||||||||||||||||||||||||||| | |||||| ||||    
T  6314954 aaatgatattcattcattcaaattgatagattacatcggata 6314913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 9799685 - 9799722
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatca 328  Q
    |||||||||||||||||||||||||||| | |||||||    
T  9799685 aaatgatattcattcattcaaattgatagagtacatca 9799722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 28086615 - 28086652
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagata 332  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  28086615 gatattcatttattcaaattgatatagtacatcagata 28086652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 30568120 - 30568157
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatca 328  Q
    |||||||||||||||||||||||||||| | |||||||    
T  30568120 aaatgatattcattcattcaaattgatagattacatca 30568157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 7579523 - 7579559
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  7579523 aaatgatattcattcattcaaattgatagagtacatc 7579559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 328
Target Start/End: Complemental strand, 21238072 - 21238040
Alignment:
Q  296 atattcattcattcaaattgatataatacatca 328  Q
    ||||||||||||||||||||||| |||||||||    
T  21238072 atattcattcattcaaattgatagaatacatca 21238040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 28296783 - 28296819
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  28296783 aaatgatattcattcattcaaattgatagagtacatc 28296819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 31712748 - 31712784
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  31712748 aaatgatattcattcattcaaattgatagagtacatc 31712784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 31720643 - 31720711
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    |||||||||||||||| | ||||||||| ||||||||  ||||||| | ||  ||||||||| ||||||    
T  31720643 aaatgatattcattcacttaaattgataaaatacatcgaatataatgacatattcaatatcgataaaaa 31720711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 40211103 - 40211143
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataa 335  Q
    ||||||||||||||||||| |||| | ||||||||||||||    
T  40211103 gatattcattcattcaaatcgatagagtacatcagatataa 40211143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 40490202 - 40490246
Alignment:
Q  279 aaaaataaaatgaaatgatattcattcattcaaattgatataata 323  Q
    ||||||||||  |||||||||| ||||||||||||||||| ||||    
T  40490202 aaaaataaaaataaatgatatttattcattcaaattgatacaata 40490246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 41684659 - 41684619
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataa 335  Q
    |||||||||||||| ||||||||| | ||||||||||||||    
T  41684659 gatattcattcatttaaattgatagagtacatcagatataa 41684619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 295 - 373
Target Start/End: Original strand, 33332384 - 33332462
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaat 373  Q
    ||||| |||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| ||||||| |||||    
T  33332384 gatatccattcattcaaattgatagaatacatcagagacaataatatgatcaatatcgctaaaaacgtaaagggtgaat 33332462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 374
Target Start/End: Original strand, 6155010 - 6155093
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||| |||||||||||  |||||| ||||||    
T  6155010 aaatgatattcattcattcaaattgatagaatacattagatacaataaaatgatcaacatcgctaaaaacataaagggtgaatc 6155093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 366
Target Start/End: Complemental strand, 36162036 - 36161955
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaag 366  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||| |||| |||||| ||||||    
T  36162036 aaaataaaatgatattcattcattcaaattgatagaatacatcaaatacaataacatgatcaacatcgttaaaaacgtaaag 36161955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 285 - 365
Target Start/End: Complemental strand, 43853768 - 43853688
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaa 365  Q
    ||||| ||| |||||||||||||||||||||||| ||||||||||||| ||||| ||  |||| |||||||||||||||||    
T  43853768 aaaataaaacgatattcattcattcaaattgatagaatacatcagatacaataacatactcaacatcgctaaaaatgtaaa 43853688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 7393502 - 7393435
Alignment:
Q  306 attcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaat 373  Q
    ||||||||||||| |||| |||||||| |||| ||||||||||||||||||||||||||||| |||||    
T  7393502 attcaaattgatagaatatatcagatacaatattatgatcaatatcgctaaaaatgtaaagggtgaat 7393435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 374
Target Start/End: Complemental strand, 27652268 - 27652179
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    ||||| ||| |||||||||||||||||||||||| ||||||||| | | ||||| |||||| ||||||||||||| ||| ||| ||||||    
T  27652268 aaaatcaaaggatattcattcattcaaattgatagaatacatcaaagacaataacatgatcgatatcgctaaaaacgtataggatgaatc 27652179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 18936097 - 18936033
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    |||||||||||||||||||||||| ||||||||||| | ||||  ||||||||||||||||||||    
T  18936097 gatattcattcattcaaattgatagaatacatcagagacaatagcatgatcaatatcgctaaaaa 18936033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 36195023 - 36194959
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| | |||||||||| |||||||    
T  36195023 gatattcattcattcaaattgatagaatacatcagacataataacacgatcaatatcactaaaaa 36194959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 366
Target Start/End: Original strand, 52933734 - 52933814
Alignment:
Q  286 aaatgaaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaag 366  Q
    |||| ||| |||||||||| ||||||||||||| ||||||| ||||| ||||| |||| ||| ||||||||||||||||||    
T  52933734 aaataaaacgatattcatttattcaaattgataaaatacattagatacaataacatgaccaacatcgctaaaaatgtaaag 52933814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 295 - 374
Target Start/End: Original strand, 1621305 - 1621384
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||||||||||||||||||| ||| ||||||||||| | ||||| ||||||||||| |||||||| ||| ||| ||||||    
T  1621305 gatattcattcattcaaatttatagaatacatcagagacaataacatgatcaatattgctaaaaacgtatagggtgaatc 1621384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 37465788 - 37465724
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    |||||||||||||| ||||||||| ||||||||||||| ||||| |||||||| |||| ||||||    
T  37465788 gatattcattcatttaaattgatagaatacatcagatacaataacatgatcaacatcgttaaaaa 37465724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 42032323 - 42032396
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggt 368  Q
    |||||||||||||||||||||||| ||||||||| || |||||| || ||||| |||| ||||||  |||||||    
T  42032323 gatattcattcattcaaattgatagaatacatcatatgtaataacataatcaacatcgttaaaaacataaaggt 42032396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 374
Target Start/End: Original strand, 48350999 - 48351067
Alignment:
Q  306 attcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    ||||||||||||| ||||||||||||| ||| | |||||||| |||||||| || ||||||| ||||||    
T  48350999 attcaaattgatagaatacatcagatacaatgacatgatcaacatcgctaataacgtaaaggatgaatc 48351067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 31891073 - 31891159
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatat----gatcaatatcgctaaaaatgtaaaggttgaat 373  Q
    |||||||||| ||||||||||||||||| ||||||||||| | || || ||    |||||||||||||||||| ||| ||| |||||    
T  31891073 aaatgatatttattcattcaaattgatagaatacatcagagacaaaaacatgatcgatcaatatcgctaaaaacgtatagggtgaat 31891159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 46716568 - 46716612
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataat 336  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||    
T  46716568 aaatgatattcattcattcaaattgatatagtacatc-gatataat 46716612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 327
Target Start/End: Complemental strand, 28857704 - 28857672
Alignment:
Q  295 gatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||||||||    
T  28857704 gatattcattcattcaaattgatataatacatc 28857672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 336
Target Start/End: Complemental strand, 12493646 - 12493595
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagatataat 336  Q
    ||||| |||||||||||||||||| ||||||||| | ||||||| |||||||    
T  12493646 aaaataaaatgatattcattcattaaaattgatagagtacatcaaatataat 12493595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 326
Target Start/End: Original strand, 35395465 - 35395500
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacat 326  Q
    |||||||||| |||||||||||||||||||||||||    
T  35395465 aaatgatatttattcattcaaattgatataatacat 35395500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 9549872 - 9549828
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataat 336  Q
    |||||||||||||||||||||||| ||||| |||||| ||||||||    
T  9549872 aaatgatattcattcattcaaattaatatagtacatc-gatataat 9549828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 372
Target Start/End: Complemental strand, 9714228 - 9714148
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaa 372  Q
    ||||||||||| |||||||||||||||| ||||||| | | | |||||  ||||||| |||| |||||| ||||||| ||||    
T  9714228 aaatgatattcgttcattcaaattgatagaatacataaaagacaataacctgatcaa-atcgttaaaaacgtaaagggtgaa 9714148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 13634423 - 13634382
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagata 332  Q
    ||||||||||||||||||||||| |||| | |||||||||||    
T  13634423 aaatgatattcattcattcaaatcgatagagtacatcagata 13634382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 14542190 - 14542230
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataat 336  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  14542190 gatattcattcattcaaattgatagaatacatc-gatataat 14542230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 44374949 - 44374993
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataat 336  Q
    |||||||||||||||||||||||||||| | |||||| ||||||||    
T  44374949 aaatgatattcattcattcaaattgatagagtacatc-gatataat 44374993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 51888007 - 51888052
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcaga 330  Q
    ||||| |||||| ||||||||||||||||||||| |||| ||||||    
T  51888007 aaaataaaatgacattcattcattcaaattgatagaatatatcaga 51888052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 320
Target Start/End: Original strand, 52555425 - 52555454
Alignment:
Q  291 aaatgatattcattcattcaaattgatata 320  Q
    ||||||||||||||||||||||||||||||    
T  52555425 aaatgatattcattcattcaaattgatata 52555454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 24100594 - 24100558
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  24100594 aaatgatattcattcattcaaattgatagagtacatc 24100558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 38545830 - 38545862
Alignment:
Q  294 tgatattcattcattcaaattgatataatacat 326  Q
    ||||||||||||||||||||||||||| |||||    
T  38545830 tgatattcattcattcaaattgatatagtacat 38545862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 38943817 - 38943853
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  38943817 aaatgatattcattcattcaaattgatagagtacatc 38943853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 52979048 - 52979008
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataa 335  Q
    ||||||| ||||||||||||||| || ||||||||||||||    
T  52979048 gatattctttcattcaaattgatctagtacatcagatataa 52979008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 56236491 - 56236527
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  56236491 aaatgatattcattcattcaaattgatagagtacatc 56236527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 16235724 - 16235656
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    |||||||||| ||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||    
T  16235724 aaatgatatttattcattcaaattgatagaatacatcagagacaataatatgatcaatatcgctaaaaa 16235656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 53508520 - 53508437
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||||||||||||||||| || |||||| ||||||||||||| ||||| ||||||||||||||||||||  |||||| ||||||    
T  53508520 aaatgatattcattcatttaatttgatagaatacatcagatacaataacatgatcaatatcgctaaaaacataaagggtgaatc 53508437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 372
Target Start/End: Complemental strand, 41818509 - 41818432
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaa 372  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| || || ||||||||||||||| |||||| ||||    
T  41818509 gatattcattcattcaaattgatagaatacatcagagataataacatcattaatatcgctaaaaatataaagggtgaa 41818432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 298 - 374
Target Start/End: Complemental strand, 42461040 - 42460964
Alignment:
Q  298 attcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    ||||||||||||||||||| | ||||||||||| | ||||| |||||||||||||||| ||||||||||| ||||||    
T  42461040 attcattcattcaaattgacagaatacatcagagacaataacatgatcaatatcgctataaatgtaaagggtgaatc 42460964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 374
Target Start/End: Original strand, 21289608 - 21289687
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||||||||||||||||||||||| ||| ||||||| | ||||| |||||||||||||||||||| ||| ||| ||||||    
T  21289608 gatattcattcattcaaattgatagaatgcatcagagacaataacatgatcaatatcgctaaaaacgtatagggtgaatc 21289687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 8915006 - 8914942
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    |||||||||||||||||||||||| ||||||||||| | ||||| || |||||||||||||||||    
T  8915006 gatattcattcattcaaattgatagaatacatcagagacaataacatcatcaatatcgctaaaaa 8914942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 27706020 - 27706084
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    |||||||||||||||||||||||| ||||||||||| | ||||| |||||| |||||||||||||    
T  27706020 gatattcattcattcaaattgatagaatacatcagagacaataacatgatcgatatcgctaaaaa 27706084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 51924021 - 51923957
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    |||||||||||||||||||||||| ||| ||||||| | ||||| ||||||||||||||||||||    
T  51924021 gatattcattcattcaaattgatagaatgcatcagagacaataacatgatcaatatcgctaaaaa 51923957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 374
Target Start/End: Complemental strand, 27856451 - 27856380
Alignment:
Q  303 ttcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||||||||||||||| || |||||||| | ||||| |||||||||||||||||||| ||||| | ||||||    
T  27856451 ttcattcaaattgataaaacacatcagacacaataacatgatcaatatcgctaaaaacgtaaaagatgaatc 27856380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 50194137 - 50194176
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcaga 330  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  50194137 aaatgatattcattcattcaaattgatataatacatcaga 50194176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 373
Target Start/End: Complemental strand, 38142814 - 38142741
Alignment:
Q  302 attcattcaaattgatataatacatcagatataataatatgatca--atatcgctaaaaatgtaaaggttgaat 373  Q
    ||||||||||||||||| ||||||| ||||| | ||| |||||||  ||||||||||||||||||||| |||||    
T  38142814 attcattcaaattgatagaatacattagatacagtaaaatgatcagcatatcgctaaaaatgtaaagggtgaat 38142741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 3085092 - 3085160
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    |||||||||||||||||||||||||||| ||||| ||||||| ||||| ||| |||  || ||||||||    
T  3085092 aaatgatattcattcattcaaattgatagaatacttcagatacaataacatggtcatcattgctaaaaa 3085160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 7546910 - 7546846
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    |||||||||| ||||||||||||| ||||||||| | | ||| | ||||||||||||||||||||    
T  7546910 gatattcatttattcaaattgataaaatacatcaaagacaatgacatgatcaatatcgctaaaaa 7546846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 374
Target Start/End: Complemental strand, 51487381 - 51487297
Alignment:
Q  295 gatattcattcattcaaattgatat-----aatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    ||||||||||||||||||||||||      ||||||| ||| ||||||| ||||| |||||||||||||| ||||||| ||||||    
T  51487381 gatattcattcattcaaattgataggatagaatacattagagataataacatgattaatatcgctaaaaacgtaaagggtgaatc 51487297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 14859777 - 14859734
Alignment:
Q  296 atattcattcattcaaattgatataatacatcagatataataat 339  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||    
T  14859777 atattcattcattcaaattgatagaatacatcagatacaataat 14859734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 52115807 - 52115881
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaa 365  Q
    |||| ||||||||| ||||||||||||| |||||||| || | ||||| |||||  ||||||||||||| |||||    
T  52115807 aaataatattcatttattcaaattgatagaatacatcggagacaataacatgattgatatcgctaaaaacgtaaa 52115881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 628725 - 628762
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatca 328  Q
    |||||||||||||||||||||||||||| |||||||||    
T  628725 aaatgatattcattcattcaaattgatagaatacatca 628762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 4822098 - 4822057
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacat 326  Q
    ||||| |||||||||||||||||||||||||||| |||||||    
T  4822098 aaaataaaatgatattcattcattcaaattgataaaatacat 4822057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 32881160 - 32881197
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatca 328  Q
    |||||||||||||||||||||||||||| |||||||||    
T  32881160 aaatgatattcattcattcaaattgatagaatacatca 32881197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 20464766 - 20464806
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagat 331  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  20464766 aaatgatattcattcattcaaattgatagagtacatcagat 20464806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 35501443 - 35501479
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| ||||||||    
T  35501443 aaatgatattcattcattcaaattgataaaatacatc 35501479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 318
Target Start/End: Original strand, 25460776 - 25460815
Alignment:
Q  279 aaaaataaaatgaaatgatattcattcattcaaattgata 318  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  25460776 aaaaataaaataaaatgatattcatttattcaaattgata 25460815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 328
Target Start/End: Complemental strand, 35175696 - 35175653
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatca 328  Q
    ||||| ||| |||||||||||||||||||||||| |||||||||    
T  35175696 aaaataaaacgatattcattcattcaaattgatagaatacatca 35175653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 358
Target Start/End: Complemental strand, 1650238 - 1650176
Alignment:
Q  296 atattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaa 358  Q
    |||||||||||||  |||||||| | ||||||| ||| |||||| || |||||||||||||||    
T  1650238 atattcattcatttgaattgatagagtacatcatatacaataatttgttcaatatcgctaaaa 1650176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 36910561 - 36910611
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagatataa 335  Q
    ||||| ||| ||||||||||||||||||| |||| | ||||||||||||||    
T  36910561 aaaataaaacgatattcattcattcaaatcgatagagtacatcagatataa 36910611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 9797339 - 9797376
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagata 332  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  9797339 gatattcattcattcaaatcgatatagtacatcagata 9797376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 17238095 - 17238058
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatca 328  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  17238095 aaatgatattcattcattcaaattgagatattacatca 17238058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 20252096 - 20252059
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatca 328  Q
    |||||||||||||||||||||||||||| | |||||||    
T  20252096 aaatgatattcattcattcaaattgataaagtacatca 20252059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 21533610 - 21533651
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagata 332  Q
    ||||||||||||||||||||||| |||| | |||||||||||    
T  21533610 aaatgatattcattcattcaaatcgatagagtacatcagata 21533651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 46304326 - 46304363
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagata 332  Q
    |||||||||||||||||||||||| | |||||||||||    
T  46304326 gatattcattcattcaaattgatagagtacatcagata 46304363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 47041849 - 47041890
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagata 332  Q
    ||||||||||||||||||||||| |||| | |||||||||||    
T  47041849 aaatgatattcattcattcaaatagatagattacatcagata 47041890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 48650535 - 48650576
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagata 332  Q
    ||||||||||||||||||||||| |||| | |||||||||||    
T  48650535 aaatgatattcattcattcaaatcgatagagtacatcagata 48650576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 55061807 - 55061754
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaat 348  Q
    ||||||||||| |||||  ||||| ||||||||||||| ||||| |||||||||    
T  55061807 gatattcattcgttcaacctgatagaatacatcagatacaataacatgatcaat 55061754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 7448719 - 7448759
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataa 335  Q
    |||||||||||||||||||||||| | |||| |||||||||    
T  7448719 gatattcattcattcaaattgatagagtacaacagatataa 7448759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 7456861 - 7456901
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataa 335  Q
    |||||||||||||||||||||||| | |||| |||||||||    
T  7456861 gatattcattcattcaaattgatagagtacaacagatataa 7456901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 7658454 - 7658422
Alignment:
Q  294 tgatattcattcattcaaattgatataatacat 326  Q
    ||||||||||||||||||||||||||| |||||    
T  7658454 tgatattcattcattcaaattgatatagtacat 7658422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 327
Target Start/End: Complemental strand, 10977679 - 10977647
Alignment:
Q  295 gatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||| ||||||    
T  10977679 gatattcattcattcaaattgatatagtacatc 10977647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 323
Target Start/End: Complemental strand, 11225790 - 11225762
Alignment:
Q  295 gatattcattcattcaaattgatataata 323  Q
    |||||||||||||||||||||||||||||    
T  11225790 gatattcattcattcaaattgatataata 11225762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 25939170 - 25939206
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  25939170 aaatgatattcattcattcaaattgataaagtacatc 25939206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 26715936 - 26715980
Alignment:
Q  304 tcattcaaattgatataatacatcagatataataatatgatcaat 348  Q
    ||||||||||||||| || ||||||| || |||||||||||||||    
T  26715936 tcattcaaattgatagaacacatcagttacaataatatgatcaat 26715980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 33076725 - 33076689
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  33076725 aaatgatattcattcattcaaattgatagagtacatc 33076689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 36540371 - 36540407
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  36540371 aaatgatatccattcattcaaattgatatagtacatc 36540407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 36623931 - 36623967
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  36623931 aaatgatattcattcattcaaattgatagagtacatc 36623967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 48652117 - 48652153
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  48652117 aaatgatattcattcattcaaattgataaagtacatc 48652153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 366
Target Start/End: Complemental strand, 4445 - 4370
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaag 366  Q
    |||| ||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||||||||||| ||||||    
T  4445 aaataatattcattcattcaaattgataaaatacatcagatacaataacatcatcaatatcgctaaaaacgtaaag 4370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 30776963 - 30776880
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||||||||||||||||||| ||||||| ||||| ||||| | ||||| |||||||||||||||||||| ||||||| ||||||    
T  30776963 aaatgatattcattcattcatattgatagaatacgtcagagacaataacatgatcaatatcgctaaaaacgtaaagggtgaatc 30776880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 374
Target Start/End: Complemental strand, 8103022 - 8102943
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||||||||||||||| ||||||| ||||||||||| | ||||| |||||||||||||||||||| ||||| | ||||||    
T  8103022 gatattcattcattcatattgatagaatacatcagagacaataacatgatcaatatcgctaaaaacgtaaaaggtgaatc 8102943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 14802123 - 14802055
Alignment:
Q  296 atattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaa 364  Q
    ||||||||||||||||||||||| ||||||||||| | ||||| ||||| |||||||||||||| ||||    
T  14802123 atattcattcattcaaattgatagaatacatcagagacaataacatgattaatatcgctaaaaacgtaa 14802055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 679408 - 679325
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    ||||| |||| ||||||||||||||||| ||||||||||||| ||||| || ||||| || |||||||| ||||||| ||||||    
T  679408 aaatgttatttattcattcaaattgatagaatacatcagatacaataacataatcaacattgctaaaaacgtaaagggtgaatc 679325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 373
Target Start/End: Complemental strand, 1523699 - 1523621
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaat 373  Q
    |||||||||||||||| |||| || ||||||||||| | ||||||||||||||||| ||| |||| ||||||| |||||    
T  1523699 gatattcattcattcatattggtagaatacatcagagaaaataatatgatcaatattgctgaaaacgtaaaggatgaat 1523621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 31851682 - 31851750
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    |||| ||||||||||||||||||||||| ||||||||||||  ||||| | |||||| |||||||||||    
T  31851682 aaataatattcattcattcaaattgatagaatacatcagatgcaataacaagatcaacatcgctaaaaa 31851750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 22571685 - 22571628
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcg 352  Q
    ||||||| |||||||||||||||| |||||||||||||||||||  ||||||| ||||    
T  22571685 gatattcgttcattcaaattgatagaatacatcagatataataagttgatcaaaatcg 22571628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 546320 - 546248
Alignment:
Q  302 attcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    ||||||||||||||||| |||| |||||| | ||| | |||||||||||||||||||| ||| ||| ||||||    
T  546320 attcattcaaattgatagaatatatcagacacaatgacatgatcaatatcgctaaaaacgtataggatgaatc 546248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 10084942 - 10084998
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaa 347  Q
    |||| ||||||||||||||||||||||| ||||||||||||| ||||| || |||||    
T  10084942 aaataatattcattcattcaaattgatagaatacatcagatagaataacatcatcaa 10084998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 32060171 - 32060124
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagata 332  Q
    ||||| ||| |||||||||||||||||||||||||| |||||||||||    
T  32060171 aaaataaaacgatattcattcattcaaattgatatattacatcagata 32060124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 1450531 - 1450572
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacat 326  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  1450531 aaaataaaatgatattcattcattcaaatcgatataatacat 1450572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 9380318 - 9380249
Alignment:
Q  296 atattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaa 365  Q
    ||||||| |||||||||||||||||||| |||| |||  |||| |||||||| || | ||||||||||||    
T  9380318 atattcactcattcaaattgatataatatatcaaatactataacatgatcaacattgataaaaatgtaaa 9380249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 29744519 - 29744483
Alignment:
Q  296 atattcattcattcaaattgatataatacatcagata 332  Q
    ||||||||||||||||||||||| |||||||||||||    
T  29744519 atattcattcattcaaattgatagaatacatcagata 29744483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 330
Target Start/End: Complemental strand, 31297104 - 31297069
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcaga 330  Q
    |||||||||||||||||||||||| |||||||||||    
T  31297104 gatattcattcattcaaattgatagaatacatcaga 31297069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 374
Target Start/End: Complemental strand, 6957420 - 6957358
Alignment:
Q  312 attgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    ||||||| | ||||||| ||| ||||||||| |||| ||||||||||| ||||||| ||||||    
T  6957420 attgatagagtacatcaaatacaataatatgttcaacatcgctaaaaacgtaaagggtgaatc 6957358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 337
Target Start/End: Complemental strand, 20845449 - 20845408
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataata 337  Q
    |||||||||||||||||||||||||| |||||| |||||||||    
T  20845449 gatattcattcattcaaattgatatagtacatc-gatataata 20845408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 34185489 - 34185535
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagat 331  Q
    ||||| |||||||||||||||||||||||||||| | || |||||||    
T  34185489 aaaataaaatgatattcattcattcaaattgatagagtatatcagat 34185535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 606493 - 606452
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagata 332  Q
    ||||||||||||||||||||||| |||| | |||||||||||    
T  606493 aaatgatattcattcattcaaatcgatagagtacatcagata 606452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 14174876 - 14174913
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagata 332  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  14174876 gatattcattcattcaaatcgatatattacatcagata 14174913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 14179412 - 14179449
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagata 332  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  14179412 gatattcattcattcaaatcgatatattacatcagata 14179449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 6957268 - 6957228
Alignment:
Q  370 gaatcaacaacgttgaagcccaaatcattgattgaatctgt 410  Q
    ||||| |||||||||| ||| ||||||||||||||||||||    
T  6957268 gaatctacaacgttgatgcctaaatcattgattgaatctgt 6957228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 14731066 - 14731030
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    ||||||||||||||||||||||||||||  |||||||    
T  14731066 aaatgatattcattcattcaaattgataacatacatc 14731030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 374
Target Start/End: Original strand, 2979100 - 2979179
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||||||||| ||||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||| ||| ||||||    
T  2979100 gatattcatttattcaaattgatagaatacatcagaaacaataacatgatcaatatcgctaaaaatgtatagggtgaatc 2979179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 35920786 - 35920854
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||| ||||||||||    
T  35920786 aaatgatattcattcaatcaaattgatataatacatcagatacaatcacatgatcaatgtcgctaaaaa 35920854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 374
Target Start/End: Complemental strand, 14211521 - 14211442
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||||||||||||||||||||||||||||||||| | | ||||  |||||||||||||||||||| ||| ||| ||||||    
T  14211521 gatattcattcattcaaattgatataatacatcatagacaatagcatgatcaatatcgctaaaaacgtatagggtgaatc 14211442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 19103262 - 19103340
Alignment:
Q  296 atattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    ||||| ||||||||||||||||| ||||||||||| | ||||| |||||||||||||||||||| ||| ||| ||||||    
T  19103262 atatttattcattcaaattgatagaatacatcagagacaataacatgatcaatatcgctaaaaacgtataggatgaatc 19103340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 374
Target Start/End: Original strand, 28540690 - 28540779
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||| |||| |||||||||||||| ||||||||| ||||||||| | | ||||| |||||||||||||||||||| ||| ||| ||||||    
T  28540690 aaaaagaaaggatattcattcatttaaattgataaaatacatcaaagacaataacatgatcaatatcgctaaaaacgtatagggtgaatc 28540779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 16758843 - 16758781
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaa 347  Q
    ||||| ||||||||||| |||||| ||||||||| ||||||| ||||||||||||||||||||    
T  16758843 aaaataaaatgatattctttcatttaaattgatagaatacataagatataataatatgatcaa 16758781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 374
Target Start/End: Complemental strand, 24874822 - 24874744
Alignment:
Q  296 atattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    ||||||||| ||| |||||||||| |||||||| |||  ||||||||||||||||| ||||||| ||||||| ||||||    
T  24874822 atattcatttattaaaattgatatgatacatcatataggataatatgatcaatatccctaaaaacgtaaaggatgaatc 24874744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 39567562 - 39567500
Alignment:
Q  297 tattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    |||||||||||||||||||||||||||||||| | | ||||| |||||||||||| |||||||    
T  39567562 tattcattcattcaaattgatataatacatcaaagacaataacatgatcaatatcactaaaaa 39567500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 19121210 - 19121127
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||| ||||||||||||||||||||||| | ||||||||||| ||||| |||  ||| ||| || |||| ||||||| ||||||    
T  19121210 aaattatattcattcattcaaattgataaactacatcagatacaataacatgtccaacatctctgaaaacgtaaagggtgaatc 19121127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 15710984 - 15710947
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatca 328  Q
    |||||||||||||||||||||||||||| |||||||||    
T  15710984 aaatgatattcattcattcaaattgatagaatacatca 15710947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 36057106 - 36057147
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacat 326  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  36057106 aaaataaaatgatattcattcattcaaatcgatataatacat 36057147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 8088014 - 8088054
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagat 331  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  8088014 aaatgatattcattcattcaaattgatagaatgcatcagat 8088054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 326
Target Start/End: Original strand, 28423710 - 28423745
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacat 326  Q
    |||||||||||||||||||||||||||||| |||||    
T  28423710 aaatgatattcattcattcaaattgatatagtacat 28423745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 327
Target Start/End: Original strand, 33486236 - 33486279
Alignment:
Q  284 taaaatgaaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||    
T  33486236 taaaattaaaagatattcattcattcaaattgatagaatacatc 33486279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 319
Target Start/End: Original strand, 12628188 - 12628222
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatat 319  Q
    ||||| |||||||||||||||||||||||||||||    
T  12628188 aaaattaaatgatattcattcattcaaattgatat 12628222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 5378742 - 5378698
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataat 336  Q
    |||||||||||||||||||||||||||| | |||||| ||||||||    
T  5378742 aaatgatattcattcattcaaattgatagagtacatc-gatataat 5378698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 328
Target Start/End: Original strand, 8984794 - 8984827
Alignment:
Q  295 gatattcattcattcaaattgatataatacatca 328  Q
    |||||||||||||||||||||||| |||||||||    
T  8984794 gatattcattcattcaaattgatagaatacatca 8984827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 26905309 - 26905342
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatac 324  Q
    |||||||||||||||||| |||||||||||||||    
T  26905309 aaatgatattcattcattaaaattgatataatac 26905342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 320
Target Start/End: Complemental strand, 34866872 - 34866843
Alignment:
Q  291 aaatgatattcattcattcaaattgatata 320  Q
    ||||||||||||||||||||||||||||||    
T  34866872 aaatgatattcattcattcaaattgatata 34866843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 17218163 - 17218127
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  17218163 aaatgatattcattcattcaaattgatagagtacatc 17218127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 24229589 - 24229629
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataa 335  Q
    ||||||||||||||||||| |||| | ||||||||||||||    
T  24229589 gatattcattcattcaaatcgatagagtacatcagatataa 24229629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 40775201 - 40775165
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  40775201 aaatgatattcattcattcaaattgatagagtacatc 40775165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 41358473 - 41358430
Alignment:
Q  292 aatgatattcattcattcaaattgatataatacatcagatataat 336  Q
    ||||||||||||||||||||||||||| | |||||| ||||||||    
T  41358473 aatgatattcattcattcaaattgatagagtacatc-gatataat 41358430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 374
Target Start/End: Original strand, 10237011 - 10237090
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||||||||||| ||| ||| ||||||    
T  10237011 gatattcattcattcaaattgatagaatacatcagagacaataacatgatcaatatcgctaaaaacgtatagggtgaatc 10237090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 14955838 - 14955755
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||||||||||||||||| ||||||||| ||||||| ||| | ||||| ||||||||||||||||||||| |||||| ||||||    
T  14955838 aaatgatattcattcatttaaattgatagaatacataagagacaataacatgatcaatatcgctaaaaatataaaggatgaatc 14955755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 374
Target Start/End: Complemental strand, 3309249 - 3309171
Alignment:
Q  296 atattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    ||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||||||||||| ||| ||| ||||||    
T  3309249 atattcattcattcaaattgatagaatacatcagagacaataacatgatcaatatcgctaaaaacgtatagggtgaatc 3309171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 19595694 - 19595758
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    ||||||||| ||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||    
T  19595694 gatattcatgcattcaaattgatataatatatcagatacaataacatgatcaagatcgctaaaaa 19595758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 14416464 - 14416381
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||||||||| ||||||||||||||||| ||||||||||||| ||||| ||| |||| |||||||| || ||||| | ||||||    
T  14416464 aaatgatatttattcattcaaattgatagaatacatcagatacaataacatgttcaacatcgctaacaacgtaaatggtgaatc 14416381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 16376283 - 16376216
Alignment:
Q  298 attcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaa 365  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||  |||| | || |||||||||    
T  16376283 attcattcattcaaattaataaaatacatcagatataataatatgattgatattgttacaaatgtaaa 16376216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 6358676 - 6358746
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaa 365  Q
    |||||||||||||||||||||||  ||||||||||||| |||||  |||||||||||  |||||| |||||    
T  6358676 gatattcattcattcaaattgatggaatacatcagatacaataacttgatcaatatcattaaaaacgtaaa 6358746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 359
Target Start/End: Complemental strand, 3460584 - 3460527
Alignment:
Q  302 attcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    ||||||||||||||||| |||| |||||| | ||||| ||||||||||||||||||||    
T  3460584 attcattcaaattgatagaatatatcagagacaataacatgatcaatatcgctaaaaa 3460527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 3465640 - 3465576
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    |||||||||||||| ||||||||| |||| |||||| | ||||| ||||||||||| ||||||||    
T  3465640 gatattcattcatttaaattgatagaatatatcagagacaataacatgatcaatattgctaaaaa 3465576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 32448419 - 32448458
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcaga 330  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  32448419 aaatgatattcattcattcaaattgatagaatacatcaga 32448458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 12553965 - 12554039
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaa 359  Q
    ||||| |||||||||||||||||||||||||||| | || |||||||| ||||| ||  |||| || ||||||||    
T  12553965 aaaataaaatgatattcattcattcaaattgatagagtatatcagatacaataacatattcaacattgctaaaaa 12554039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 366
Target Start/End: Original strand, 18107550 - 18107616
Alignment:
Q  300 tcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaag 366  Q
    ||||||||||||||||||| | ||||||| ||||||||| ||| ||| |||| ||||||| ||||||    
T  18107550 tcattcattcaaattgatagagtacatcacatataataacatgttcattatcactaaaaacgtaaag 18107616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 19598148 - 19598074
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaa 365  Q
    ||||||||| |||||||| ||||||||| |||| || ||||||||||| |||||||| || || ||||| |||||    
T  19598148 aaatgatatccattcattaaaattgatagaatatataagatataataacatgatcaacattgcaaaaaacgtaaa 19598074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 34128480 - 34128558
Alignment:
Q  296 atattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    ||||| |||||||||||||| || | || |||| ||  ||||||||| |||||||||| ||||||||||||| ||||||    
T  34128480 atatttattcattcaaattgttaaattaaatcaaatccaataatatgttcaatatcgcaaaaaatgtaaagggtgaatc 34128558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 17248944 - 17248989
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcaga 330  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||||    
T  17248944 aaaataaaatgatattcattcattcaaatcgataaaatacatcaga 17248989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 363
Target Start/End: Complemental strand, 32519096 - 32519026
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatata--ataatatgatcaatatcgctaaaaatgta 363  Q
    |||||||||||||| ||||| ||| ||||||||||| | |  |||||||||||||| | ||||||||||||    
T  32519096 gatattcattcatttaaattaatagaatacatcagagacaatataatatgatcaattttgctaaaaatgta 32519026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 330
Target Start/End: Complemental strand, 37994577 - 37994542
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcaga 330  Q
    |||||||||||||||||||||||| |||||||||||    
T  37994577 gatattcattcattcaaattgatagaatacatcaga 37994542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 337
Target Start/End: Complemental strand, 5754739 - 5754698
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataata 337  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  5754739 gatattcattcattcaaattgatagaatacatc-gatataata 5754698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 30399825 - 30399875
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagatataa 335  Q
    ||||| |||||||||||||| ||||||||||||  | ||||||||||||||    
T  30399825 aaaataaaatgatattcatttattcaaattgatcgagtacatcagatataa 30399875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 1415855 - 1415814
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagata 332  Q
    ||||||||||||||||||||||| |||| | |||||||||||    
T  1415855 aaatgatattcattcattcaaatcgatagattacatcagata 1415814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 1421973 - 1421932
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagata 332  Q
    ||||||||||||||||||||||| |||| | |||||||||||    
T  1421973 aaatgatattcattcattcaaatcgataaagtacatcagata 1421932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 11550340 - 11550377
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatca 328  Q
    |||||||||||||||||||||||||||| | |||||||    
T  11550340 aaatgatattcattcattcaaattgatagagtacatca 11550377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 11931312 - 11931268
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataat 336  Q
    |||||||||||||||||||||||||||| | |||||| ||||||||    
T  11931312 aaatgatattcattcattcaaattgataaagtacatc-gatataat 11931268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 24461743 - 24461702
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacat 326  Q
    ||||| ||| |||||||||||||||||||||||| |||||||    
T  24461743 aaaataaaacgatattcattcattcaaattgatagaatacat 24461702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 30923259 - 30923296
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatca 328  Q
    |||||||||||||||||||||||||||| | |||||||    
T  30923259 aaatgatattcattcattcaaattgatagagtacatca 30923296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 360
Target Start/End: Original strand, 32092140 - 32092205
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaat 360  Q
    |||||| || ||||||||| ||| ||| |||| ||||| |||||||||||||| ||| ||||||||    
T  32092140 gatattaatgcattcaaatcgatctaacacataagatacaataatatgatcaacatcactaaaaat 32092205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 32197536 - 32197573
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatca 328  Q
    |||||||||| | |||||||||||||||||||||||||    
T  32197536 aaatgatatttaatcattcaaattgatataatacatca 32197573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 328
Target Start/End: Complemental strand, 37884089 - 37884056
Alignment:
Q  295 gatattcattcattcaaattgatataatacatca 328  Q
    |||||||||||||||||||||||||| |||||||    
T  37884089 gatattcattcattcaaattgatatagtacatca 37884056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 4878408 - 4878444
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  4878408 aaatgatattcattcattcaaattgatagagtacatc 4878444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 12366308 - 12366272
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  12366308 aaatgatattcattcattcaaattgatagagtacatc 12366272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 15920314 - 15920278
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  15920314 aaatgatattcattcattcaaattgatagagtacatc 15920278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 18089076 - 18089108
Alignment:
Q  295 gatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||| ||||||    
T  18089076 gatattcattcattcaaattgatatagtacatc 18089108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 18141155 - 18141191
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  18141155 aaatgatattcattcattcaaattgatagagtacatc 18141191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 327
Target Start/End: Complemental strand, 26491737 - 26491705
Alignment:
Q  295 gatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||| ||||||||    
T  26491737 gatattcattcattcaaattgatagaatacatc 26491705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 374
Target Start/End: Original strand, 28871585 - 28871662
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||||||||||||||||||||  | | ||||||||||| ||||| ||  |||| || ||||||||| |||||| ||||||    
T  28871585 gatattcattcattcaaattg--agagtacatcagatacaataacattttcaacattgctaaaaatataaagggtgaatc 28871662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 295 - 373
Target Start/End: Complemental strand, 48750483 - 48750405
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaat 373  Q
    |||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||||||||||| ||| ||| |||||    
T  48750483 gatattcattcattcaaattgatagaatacatcagagacaataacatgatcaatatcgctaaaaacgtatagggtgaat 48750405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 19061211 - 19061160
Alignment:
Q  279 aaaaataaaatgaaatgatattcattcattcaaattgatataatacatcaga 330  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19061211 aaaaataaaatgatatgatattcattcattcaaattgatataatacatcaga 19061160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 374
Target Start/End: Original strand, 36775504 - 36775583
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||||||||||||||||||||||  ||||||||||| | ||||| |||||||||||||||||||| ||| ||| ||||||    
T  36775504 gatattcattcattcaaattgattgaatacatcagagacaataacatgatcaatatcgctaaaaacgtatagggtgaatc 36775583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 291 - 362
Target Start/End: Original strand, 31692257 - 31692328
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgt 362  Q
    |||||||||||||| ||||||||||||| ||||||||| || |||||| |||||||| |||| |||||||||    
T  31692257 aaatgatattcatttattcaaattgatagaatacatcatatgtaataacatgatcaacatcgttaaaaatgt 31692328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 16162127 - 16162074
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaat 348  Q
    |||||||||||||||| ||||||| ||||||||||| | |||||||||||||||    
T  16162127 gatattcattcattcatattgatagaatacatcagagacaataatatgatcaat 16162074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 40163235 - 40163298
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaa 358  Q
    |||||||||||||||||||||||| ||||||| ||||| |||||  | ||||| ||||||||||    
T  40163235 gatattcattcattcaaattgatagaatacatgagatacaataacttaatcaacatcgctaaaa 40163298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 44915936 - 44915889
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagata 332  Q
    ||||| |||||||||||||||||||||||||||| | |||||||||||    
T  44915936 aaaataaaatgatattcattcattcaaattgatagagtacatcagata 44915889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 365
Target Start/End: Original strand, 50616468 - 50616539
Alignment:
Q  294 tgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaa 365  Q
    ||||||| ||| ||| ||||||||| ||||||| ||||||||||| |||||||| || |||||||| |||||    
T  50616468 tgatatttatttatttaaattgataaaatacattagatataataacatgatcaacattgctaaaaacgtaaa 50616539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 365
Target Start/End: Original strand, 50624295 - 50624366
Alignment:
Q  294 tgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaa 365  Q
    ||||||| ||| ||| ||||||||| ||||||| ||||||||||| |||||||| || |||||||| |||||    
T  50624295 tgatatttatttatttaaattgataaaatacattagatataataacatgatcaacattgctaaaaacgtaaa 50624366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 374
Target Start/End: Original strand, 13075455 - 13075529
Alignment:
Q  300 tcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    ||||||||| || |||||| |||| || ||||| ||||| || ||||||||||||||||| ||||||| ||||||    
T  13075455 tcattcatttaagttgatagaatatattagatacaataacataatcaatatcgctaaaaaagtaaagggtgaatc 13075529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 373
Target Start/End: Complemental strand, 41994762 - 41994684
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaat 373  Q
    |||||| ||| ||||||||||||| || | |||||||| ||||| |||||||| ||| |||||||| |||||| |||||    
T  41994762 gatatttatttattcaaattgatagaaaatatcagatacaataacatgatcaaaatcactaaaaatttaaaggatgaat 41994684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 39888469 - 39888432
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagata 332  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  39888469 gatattcattcatacaaattgatataatacatcagata 39888432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 11121416 - 11121380
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| ||||||||    
T  11121416 aaatgatattcattcattcaaattgatagaatacatc 11121380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 13969314 - 13969350
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| ||||||||    
T  13969314 aaatgatattcattcattcaaattgatagaatacatc 13969350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 30853621 - 30853657
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||| ||||||||||||||||||||||    
T  30853621 aaatgatattcatttattcaaattgatataatacatc 30853657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 50377610 - 50377570
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataa 335  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  50377610 gatattcattcattcaaattgataagatacatcagatataa 50377570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 24583240 - 24583201
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcaga 330  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  24583240 aaatgatattcattcattcaaatcgatagaatacatcaga 24583201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 24583436 - 24583397
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcaga 330  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  24583436 aaatgatattcattcattcaaatcgatagaatacatcaga 24583397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 45789846 - 45789766
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaagg 367  Q
    ||||| ||| |||||||||||||| ||||||| |   | ||||||||| ||||| ||| |||| |||||||||||||||||||    
T  45789846 aaaataaaacgatattcattcatttaaattgagag--tgcatcagatacaataacatgttcaacatcgctaaaaatgtaaagg 45789766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 330
Target Start/End: Complemental strand, 47133189 - 47133154
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcaga 330  Q
    |||||||||||||||||||||||| |||||||||||    
T  47133189 gatattcattcattcaaattgatagaatacatcaga 47133154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 366
Target Start/End: Complemental strand, 25564294 - 25564225
Alignment:
Q  297 tattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaag 366  Q
    |||| ||||||| |||||||||||||||||| |||| ||| | |||||||| || | ||||||| |||||    
T  25564294 tatttattcattaaaattgatataatacatctgatacaatgacatgatcaacattgttaaaaatataaag 25564225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 26535623 - 26535586
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagata 332  Q
    |||||||||||||||||||||||| | |||||||||||    
T  26535623 gatattcattcattcaaattgatagagtacatcagata 26535586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 364
Target Start/End: Complemental strand, 34479729 - 34479643
Alignment:
Q  276 gacaaaaataaaatgaaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaa 364  Q
    ||||||||  |||| ||| |||||||||||||| ||||||| |  |||||||||||||||||| ||  |||| ||| ||||||| ||||    
T  34479729 gacaaaaaataaataaaacgatattcattcatttaaattgaga--atacatcagatataataacattttcaacatcactaaaaacgtaa 34479643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 38647024 - 38646987
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatca 328  Q
    |||||||||||||||||||||||||||| | |||||||    
T  38647024 aaatgatattcattcattcaaattgatagagtacatca 38646987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 49648660 - 49648697
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatca 328  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  49648660 aaatgatattcactcattcaaattgataaaatacatca 49648697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 49652275 - 49652231
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatcagatataat 336  Q
    |||||||||||||||||||||||||||| | |||||| ||||||||    
T  49652275 aaatgatattcattcattcaaattgatagagtacatc-gatataat 49652231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 8893732 - 8893696
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  8893732 aaatgatattcattcattcaaattgatagagtacatc 8893696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 12967407 - 12967443
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  12967407 aaatgatattcattcattcaaattgatagagtacatc 12967443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 26771546 - 26771510
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  26771546 aaatgatattcattcattcaaattgatagagtacatc 26771510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 34659315 - 34659351
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  34659315 aaatgatattcattcattcaaattgatagagtacatc 34659351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 46589588 - 46589552
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatc 327  Q
    |||||||||||||||||||||||||||| | ||||||    
T  46589588 aaatgatattcattcattcaaattgatagagtacatc 46589552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 358
Target Start/End: Complemental strand, 93411 - 93338
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaa 358  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||||||||||    
T  93411 aaaataaaatgatattcattcattcaaattgataaaatacatcagataaaataacatgataaacatcgctaaaa 93338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 328
Target Start/End: Original strand, 53206 - 53239
Alignment:
Q  295 gatattcattcattcaaattgatataatacatca 328  Q
    |||||||||||||||||||||||||| |||||||    
T  53206 gatattcattcattcaaattgatatagtacatca 53239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 295 - 374
Target Start/End: Original strand, 1472 - 1551
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaatc 374  Q
    |||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||| || |||| ||| ||| ||||||    
T  1472 gatattcattcattcaaattgatagaatacatcagagacaataacatgatcaatatcccttaaaacgtatagggtgaatc 1551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 367
Target Start/End: Original strand, 3839 - 3911
Alignment:
Q  295 gatattcattcattcaaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaagg 367  Q
    |||||||||||||||||||||||| | | |||| |||| |||||  ||||| | |||||||||||||||||||    
T  3839 gatattcattcattcaaattgatagagttcatctgatacaataaagtgatcgacatcgctaaaaatgtaaagg 3911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 31069 - 31116
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagata 332  Q
    ||||| ||| |||||||||||||||||||||||||| |||||||||||    
T  31069 aaaataaaacgatattcattcattcaaattgatatagtacatcagata 31116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 92292 - 92333
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacat 326  Q
    ||||| |||||||| |||||||||||||||||||||||||||    
T  92292 aaaataaaatgatactcattcattcaaattgatataatacat 92333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 26831 - 26882
Alignment:
Q  285 aaaatgaaatgatattcattcattcaaattgatataatacatcagatataat 336  Q
    ||||| |||||||||||||||||| ||||||||| | ||||||| |||||||    
T  26831 aaaataaaatgatattcattcattaaaattgatagagtacatcaaatataat 26882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 325
Target Start/End: Complemental strand, 245069 - 245035
Alignment:
Q  291 aaatgatattcattcattcaaattgatataataca 325  Q
    |||||||||||||||||||||||||||||| ||||    
T  245069 aaatgatattcattcattcaaattgatatagtaca 245035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 30330 - 30290
Alignment:
Q  296 atattcattcattcaaattgatataatacatcagatataata 337  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  30330 atattcattcattcaaattgataaaatacatc-gatataata 30290  T

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Target: scaffold0146 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 16104 - 16141
Alignment:
Q  291 aaatgatattcattcattcaaattgatataatacatca 328  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  16104 aaatgatattcattcattcaaattgagatattacatca 16141  T

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Target: scaffold0064 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 18891 - 18955
Alignment:
Q  309 caaattgatataatacatcagatataataatatgatcaatatcgctaaaaatgtaaaggttgaat 373  Q
    ||||| |||| ||||||||||||| ||||| |||||||| ||| || ||||| |||||| |||||    
T  18891 caaatcgatagaatacatcagatacaataacatgatcaacatccctgaaaatctaaagggtgaat 18955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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