View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_28 (Length: 425)
Name: NF1590_low_28
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 16641587 - 16641181
Alignment:
| Q |
1 |
tgataagcaggaagccaacgttccaaccgagagatggaaaatcaaagagaaccggaaaaggactgtgaagaaaatgtaagaaacatgcctacacaaaaat |
100 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
16641587 |
tgataagcaggaagccaacattccaaccgagagatggaaaatcaaagagaaccggaaaaagactgtgaagaaaatgtaagaaacatgcctacagaaaaat |
16641488 |
T |
|
| Q |
101 |
acgatttaaattgcatattctcttttaacttatcaaagacctatgtatcatgttgtttataatatccagttgtgtaacagattgtgttaagcataagttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16641487 |
acgatttaaattgcatattctcttttaacttatcaaagacctatgtatcatgttgtttataatatccagttgtgtaacagattgtgttaagcataagttc |
16641388 |
T |
|
| Q |
201 |
aaatgttaaaatctgttttctctcaactctttttggaagttaactttatcttgtgataataaactgacattctccttatattgcaaagaatataagaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16641387 |
aaatgttaaaatctgttttctctcaactctttttggaagttaactttatcttatgataataaactgacattctccttatattgcaaagaatataagaatg |
16641288 |
T |
|
| Q |
301 |
tcattgttgatcattttgataaattataacattttgcattgtgatgctcttcactattctgacttgatctaccatctgtttaaatgtaatataatcgacg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16641287 |
tcattgttgatcattttgataaattataacattttgcattgtgatgctcttcactattctgacttgatctaccatctgtttaaatgtaatataatcgacg |
16641188 |
T |
|
| Q |
401 |
cagcatg |
407 |
Q |
| |
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||||||| |
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| T |
16641187 |
cagcatg |
16641181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 14630992 - 14630780
Alignment:
| Q |
1 |
tgataagcaggaagccaacgttccaaccgagagatggaaaatcaaagagaaccggaaaaggactgtgaagaaaatgtaagaaacatgcctacacaaaaat |
100 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
14630992 |
tgataagcaagaagccaacattccaaccgagagatggaaaatcaaagagaaccggaaaagggttgtgaagaaaatgtaagaaacatgactacacaaaaat |
14630893 |
T |
|
| Q |
101 |
acgatttaaattgcatattctcttttaacttatcaaagacctatgtatcatgttgtttataatatccagttgtgtaacagattgtgttaagcataagttc |
200 |
Q |
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| ||||| ||||||| |||||||||||| |||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14630892 |
atgatttgaattgcacattctcttttaatttatcagaaacctatgtatcatg-tgtttataatatccagttgtgtaacagattgtgttaagcataagttc |
14630794 |
T |
|
| Q |
201 |
aaatgttaaaatct |
214 |
Q |
| |
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|||||||||||||| |
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| T |
14630793 |
aaatgttaaaatct |
14630780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 212 - 318
Target Start/End: Complemental strand, 14630711 - 14630605
Alignment:
| Q |
212 |
tctgttttctctcaactctttttggaagttaactttatcttgtgataataaactgacattctccttatattgcaaagaatataagaatgtcattgttgat |
311 |
Q |
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|
|||||||||||| ||||| |||||||||||||||||||||| |||||||||| |||||| |||||| |||||||||||||||||||||| ||||||||| |
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| T |
14630711 |
tctgttttctcttaactccttttggaagttaactttatcttatgataataaattgacatcctccttttattgcaaagaatataagaatgccattgttgag |
14630612 |
T |
|
| Q |
312 |
cattttg |
318 |
Q |
| |
|
||||||| |
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| T |
14630611 |
cattttg |
14630605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 16632502 - 16632421
Alignment:
| Q |
1 |
tgataagcaggaagccaacgttccaaccgagagatggaaaatcaaagagaaccggaaaaggactgtgaagaaaatgtaagaa |
82 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| |
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| T |
16632502 |
tgataagcaagaagccaacattccaaccgagagatggaaaatcaaagagaaccggaacagggttatgaagaaaatgtaagaa |
16632421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 404
Target Start/End: Complemental strand, 16632338 - 16632280
Alignment:
| Q |
346 |
gctcttcactattctgacttgatctaccatctgtttaaatgtaatataatcgacgcagc |
404 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
16632338 |
gctcttcaatattctgacatgatctaccatctgtttaaatgtaatataatcgatgcagc |
16632280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 393
Target Start/End: Complemental strand, 14630518 - 14630471
Alignment:
| Q |
346 |
gctcttcactattctgacttgatctaccatctgtttaaatgtaatata |
393 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| ||||||||||||| |
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|
| T |
14630518 |
gctcttcaatattctgacatgatctaccatctgtgtaaatgtaatata |
14630471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 15621125 - 15621167
Alignment:
| Q |
172 |
gtgtaacagattgtgttaagcataagttcaaatgttaaaatct |
214 |
Q |
| |
|
|||||||| | ||||||||||||||||||||| |||||||||| |
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|
| T |
15621125 |
gtgtaacaaaatgtgttaagcataagttcaaacgttaaaatct |
15621167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 38881331 - 38881244
Alignment:
| Q |
26 |
accgagagatggaaaatcaaagagaaccggaaaaggactgtgaagaaaatgtaagaaacatgcctacacaaaaatacgatttaaattg |
113 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| ||||| ||| ||||||||||||||||||||||||||| ||||| ||||| |
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| T |
38881331 |
accgagagatggaaaacgaaagagtttcggaaaaggattgtgatgaacgtgtaagaaacatgcctacacaaaaatatgatttgaattg |
38881244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 38881224 - 38881181
Alignment:
| Q |
171 |
tgtgtaacagattgtgttaagcataagttcaaatgttaaaatct |
214 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
38881224 |
tgtgtaacagattgtgttaagcataagtccaaatgttgaaatct |
38881181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 395
Target Start/End: Complemental strand, 38880802 - 38880757
Alignment:
| Q |
350 |
ttcactattctgacttgatctaccatctgtttaaatgtaatataat |
395 |
Q |
| |
|
|||| ||||||||| ||||||| ||| ||||||||||||||||||| |
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|
| T |
38880802 |
ttcaatattctgacatgatctatcatttgtttaaatgtaatataat |
38880757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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