View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_32 (Length: 409)
Name: NF1590_low_32
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 396
Target Start/End: Complemental strand, 41361354 - 41360966
Alignment:
| Q |
8 |
gaaatgaattcaaaaactcaaagataacaaactcctacttttatcgaagaaatattagcagtggtcgagaattaggtgtcataagccgccaccaaacatt |
107 |
Q |
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| T |
41361354 |
gaaatgaattcaaaaactcaaagataacaaactcctacttttatcgaagaaatattagcagcggtcgagaattaggtgtcataagccgccaccaaacatt |
41361255 |
T |
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| Q |
108 |
ccccaaatgtgaatatgttattagtacgaacaagcaagggttttgctaggcaatgctcaatcatatgtgcaaccttcttcatggttttcatagactaatt |
207 |
Q |
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| T |
41361254 |
ccccaaatgtgaatatgttattagtacgaacaagcaagggttttgctaggcaatgctcaatcatatgtgcaaccttcttcatggttttcatagactaatt |
41361155 |
T |
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| Q |
208 |
agtttaggtgcacagttagacttccaaattgcaaaaagattcaaaatattcttatggtgattttttatcttctcaatggttcattactaaaaccatgaag |
307 |
Q |
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| T |
41361154 |
agtttaggtgcacagttagacttccaaattgcaaaaagattcaaaatattcttatggtgattttttatcttctcaatggttcattactaaaaccatgaag |
41361055 |
T |
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| Q |
308 |
catttaggaacaactatgtgataaaacc-tgatccaaaaaacattaaacaaatatgtagcacgacacttttgattgaaggtgttccagtg |
396 |
Q |
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| T |
41361054 |
catttaggaa-aactatgtgataaaaccatgatccaaaaaacattaaacaaatatgtagcacgacacttttgattgaaggtgttccagtg |
41360966 |
T |
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