View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_34 (Length: 404)
Name: NF1590_low_34
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 10 - 375
Target Start/End: Complemental strand, 47681374 - 47681009
Alignment:
| Q |
10 |
aagaatataataatcaacacaagttacacaatcaattttccaataggtttcatatgcggctttctatagcattatcaatacaaaggtataattcttcaac |
109 |
Q |
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| T |
47681374 |
aagaatataataatcaacacaagttacacaatcaattttccaataggtttcatatgcggctttctatagcattatcaatacaaaggtctaattcttcaac |
47681275 |
T |
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| Q |
110 |
ttgtaaaatatgtaatttccacattcatcaatctaaaacatatgagtgattaaggtgaagattataaattttcagatatgaattttcaagaacatgagtg |
209 |
Q |
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| T |
47681274 |
ttgtaaaatatgtaatttccacattcatcaatctaaaacatacgagtgattaaggtgaagattataaattttcagatatgagttttcaagaacatgagtg |
47681175 |
T |
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| Q |
210 |
atttctgggttcaatggaacacttcaaaaaatttaaccaaaaactattgtaggaaactgtataaatgttgtagagtaacaaattatacctctttcatttg |
309 |
Q |
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| T |
47681174 |
atttctgggttcaatggaacacttcaaaaaatttaaccaaaaactattgtaggaaactgtatgaatgttgtagagtaacaaattatacctctttcatttg |
47681075 |
T |
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| Q |
310 |
tttattttttaggtgattacacacgctgtggtagttgaaaattattaaaggtggaatgaaccatca |
375 |
Q |
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| T |
47681074 |
tttattttttaggtgattacacacgctgtggtagttgaaaattattaaaggtggaatgaaccatca |
47681009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 359
Target Start/End: Complemental strand, 47685570 - 47685538
Alignment:
| Q |
327 |
tacacacgctgtggtagttgaaaattattaaag |
359 |
Q |
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| T |
47685570 |
tacacacgctgtggtagttgaaaactattaaag |
47685538 |
T |
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