View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_36 (Length: 383)
Name: NF1590_low_36
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 6 - 365
Target Start/End: Original strand, 19642479 - 19642838
Alignment:
| Q |
6 |
agcagcacagaccaaaacactcttacaacccaacctccccaaattcttatccttacccggattcaataacaggtcatcgggtcccgaacttgttggacaa |
105 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19642479 |
agcaacacaaaccaaaacactcttacaacccaacctccccaaattcttatccttacccggattcaataacatgtcatcgggtcccgaacttgttggacaa |
19642578 |
T |
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| Q |
106 |
acaaatcgccataaattatccacaaaagataaatatttttcaggtttctcagcctcagatccaactctttccacaccccaaaagaatgcatgaaccaaaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19642579 |
acaaatcgccataaattatccacaaaagataaatattgttcaggtttctcagcctcagatccaactctttccacaccccaaaagaatgcatgaaccaaaa |
19642678 |
T |
|
| Q |
206 |
caatcccttcaatgttaatcccttgaagcccttcagttccaacacgaatagccatgtggtgtgcaatgtttgcaccagcactgtctcctgcaaagaaaac |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19642679 |
caatcccttcaatgttaatcccttgaagcccttcagttccaacacgaatagccatgtggtgtgcaatgtttgcaccagcactgtctcctgcaaagaaaac |
19642778 |
T |
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| Q |
306 |
ttttccaaaatctgcgtaactgttgatccattcatcacgaccatttccatgcaaatgaga |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19642779 |
ttttccaaaatctgcgtaactgttgatccattcatcacgaccatttccatgcaaatgaga |
19642838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 365
Target Start/End: Original strand, 33918002 - 33918361
Alignment:
| Q |
6 |
agcagcacagaccaaaacactcttacaacccaacctccccaaattcttatccttacccggattcaataacaggtcatcgggtcccgaacttgttggacaa |
105 |
Q |
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|||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| |
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| T |
33918002 |
agcaacacaaaccaaaactctcttacaacccaacctccccaaattcttatccttacccggattcaaaaacgggtcatcggatcccgaacttgttggacaa |
33918101 |
T |
|
| Q |
106 |
acaaatcgccataaattatccacaaaagataaatatttttcaggtttctcag---cctcagatccaactctttccacaccccaaaagaatgcatgaacca |
202 |
Q |
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||||| | |||||||||||| | |||||||| | || ||| |||||||| ||||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
33918102 |
acaaacctccataaattatcagccaaagataagtgtt---cagatttctcagtagcctcagatccaaccctttcaacaccccaaaagaatgtatgaacca |
33918198 |
T |
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| Q |
203 |
aaacaatcccttcaatgttaatcccttgaagcccttcagttccaacacgaatagccatgtggtgtgcaatgtttgcaccagcactgtctcctgcaaagaa |
302 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
33918199 |
aaacaatcccttcaaggttaatcccttgaagcccttgagttccaacacgaatagccatgtgatttgcaatgtttgcaccagcactgtctcctgcaaagaa |
33918298 |
T |
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| Q |
303 |
aacttttccaaaatctgcgtaactgttgatccattcatcacgaccatttccatgcaaatgaga |
365 |
Q |
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| ||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
33918299 |
catttttccaaaatctgcataacggttgatccattcatcagaaccatttccatgcaaatgaga |
33918361 |
T |
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