View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_low_41 (Length: 367)

Name: NF1590_low_41
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_low_41
NF1590_low_41
[»] chr7 (7 HSPs)
chr7 (1-354)||(43586526-43586879)
chr7 (1-354)||(35965900-35966253)
chr7 (237-354)||(43582545-43582662)
chr7 (239-354)||(35973425-35973540)
chr7 (239-354)||(35994837-35994952)
chr7 (239-354)||(8985666-8985781)
chr7 (1-39)||(35987627-35987665)
[»] chr8 (4 HSPs)
chr8 (1-354)||(43445214-43445567)
chr8 (11-275)||(18014860-18015122)
chr8 (239-354)||(43441329-43441445)
chr8 (207-244)||(32529109-32529146)
[»] chr6 (1 HSPs)
chr6 (5-354)||(26257668-26258018)
[»] chr3 (2 HSPs)
chr3 (239-354)||(38060742-38060857)
chr3 (239-325)||(2765376-2765461)
[»] chr4 (3 HSPs)
chr4 (5-120)||(16942652-16942767)
chr4 (239-354)||(16937482-16937601)
chr4 (207-244)||(28394896-28394933)
[»] chr1 (3 HSPs)
chr1 (18-129)||(24012141-24012252)
chr1 (223-275)||(42039989-42040039)
chr1 (207-244)||(6831307-6831344)


Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 43586526 - 43586879
Alignment:
1 tgtcgacagtcaggcagcaattgcaatttcaaaggatccagtatgtcatgggaggactaaacatttcaacatcaagctctacttcttaagagaggttcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
43586526 tgtcgacagtcaggcagcaattgcaatttcaaaggatccagtatgtcatgggaagactaaacatttcaacatcaagctctacttcttaagagaggttcaa 43586625  T
101 caaagtggagaagtcactttggtttattgcagatcagaagagcaactggcagatttatttacaaaaccacttcctgttggcaagtttcagttcttaaggc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
43586626 caaagtggagaagtcactttggtttattgcagatcagaagagcaactggcagatttatttacaaaaccacttcctgttagcaagtttgagttcttaaggc 43586725  T
201 agaaaattggagtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43586726 agaaaattggagtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgt 43586825  T
301 atcatttattttcagtcaattagtgttcatacattttaggagcaagtagttgtt 354  Q
    |||| ||||||| ||||||||||||||| |||||||||||||||||||||||||    
43586826 atcagttatttttagtcaattagtgttcctacattttaggagcaagtagttgtt 43586879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 35966253 - 35965900
Alignment:
1 tgtcgacagtcaggcagcaattgcaatttcaaaggatccagtatgtcatgggaggactaaacatttcaacatcaagctctacttcttaagagaggttcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
35966253 tgtcgacagtcaggcagcaattgcaatttcaaaggatccagtatgtcatgggaagactaaacatttcaacattaagctctacttcttaagagaggttcaa 35966154  T
101 caaagtggagaagtcactttggtttattgcagatcagaagagcaactggcagatttatttacaaaaccacttcctgttggcaagtttcagttcttaaggc 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
35966153 caaagtggagaagtcactttgctttattgcagatcagaagagcaactggcagatttatttacaaaaccacttcctgttagcaagtttgagttcttaaggc 35966054  T
201 agaaaattggagtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
35966053 agaaaattggagtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggcttttgtttatgtttattttattctct 35965954  T
301 atcatttattttcagtcaattagtgttcatacattttaggagcaagtagttgtt 354  Q
    |||| ||||||| ||||||||||||||| |||||||||||||||||||||||||    
35965953 atcagttatttttagtcaattagtgttcctacattttaggagcaagtagttgtt 35965900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 237 - 354
Target Start/End: Original strand, 43582545 - 43582662
Alignment:
237 agtgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatcatttattttcagtcaattagtgttcatacattt 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||    
43582545 agtgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatcagttatttttagtcaattagtgttcctacattt 43582644  T
337 taggagcaagtagttgtt 354  Q
    ||||||||||||||||||    
43582645 taggagcaagtagttgtt 43582662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 239 - 354
Target Start/End: Complemental strand, 35973540 - 35973425
Alignment:
239 tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatcatttattttcagtcaattagtgttcatacatttta 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||||||    
35973540 tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctctatcagttatttttagtcaattagtgttcctacatttta 35973441  T
339 ggagcaagtagttgtt 354  Q
    ||||||||||||||||    
35973440 ggagcaagtagttgtt 35973425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 239 - 354
Target Start/End: Complemental strand, 35994952 - 35994837
Alignment:
239 tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatcatttattttcagtcaattagtgttcatacatttta 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||||||    
35994952 tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctctatcagttatttttagtcaattagtgttcctacatttta 35994853  T
339 ggagcaagtagttgtt 354  Q
    ||||||||||||||||    
35994852 ggagcaagtagttgtt 35994837  T

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Target: chr7; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 239 - 354
Target Start/End: Original strand, 8985666 - 8985781
Alignment:
239 tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatcatttattttcagtcaattagtgttcatacatttta 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| ||||||||||||||| |||||||||    
8985666 tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtaacaattacttttagtcaattagtgttcctacatttta 8985765  T
339 ggagcaagtagttgtt 354  Q
    ||||||||||||||||    
8985766 ggagcaagtagttgtt 8985781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35987665 - 35987627
Alignment:
1 tgtcgacagtcaggcagcaattgcaatttcaaaggatcc 39  Q
    |||||||||||||||||||||||||||||||||||||||    
35987665 tgtcgacagtcaggcagcaattgcaatttcaaaggatcc 35987627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 43445214 - 43445567
Alignment:
1 tgtcgacagtcaggcagcaattgcaatttcaaaggatccagtatgtcatgggaggactaaacatttcaacatcaagctctacttcttaagagaggttcaa 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||    
43445214 tgtcgacagtcaggcatcaattgcaatttcaaaggatccagtatgtcatgggaagactaaacatttcaacattaagttctacttcttaagagaggttcaa 43445313  T
101 caaagtggagaagtcactttggtttattgcagatcagaagagcaactggcagatttatttacaaaaccacttcctgttggcaagtttcagttcttaaggc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
43445314 caaagtggagaagtcactttggtttattgcagatcagaagagcaactggcagatttatttacaaaaccacttcctgttagcaagtttgagttcttaaggc 43445413  T
201 agaaaattggagtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43445414 agaaaattggagtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgt 43445513  T
301 atcatttattttcagtcaattagtgttcatacattttaggagcaagtagttgtt 354  Q
    |||| ||||||| ||||||||||||||| |||||||||||||||||||||||||    
43445514 atcagttatttttagtcaattagtgttcctacattttaggagcaagtagttgtt 43445567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 11 - 275
Target Start/End: Original strand, 18014860 - 18015122
Alignment:
11 caggcagcaattgcaatttcaaaggatccagtatgtcatgggaggactaaacatttcaacatcaagctctacttcttaagagaggttcaacaaagtggag 110  Q
    |||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||||||||||||||||||||||||||| | || |||| |||||    
18014860 caggcagcaattgcaatttcaaaggatccagtgtgtcatggcaagactaaacattttaacatcaagctctacttcttaagagagatgcagcaaaatggag 18014959  T
111 aagtcactttggtttattgcagatcagaagagcaactggcagatttatttacaaaaccacttcctgttggcaagtttcagttcttaaggcagaaaattgg 210  Q
    |||| ||||||||||||||||  ||| | || ||| | |||||  | |||||||| |||||||||||   ||||||| |||| |||||||| ||| ||||    
18014960 aagtaactttggtttattgcaagtcaaaggatcaattagcagacatgtttacaaagccacttcctgtcaacaagtttgagtttttaaggcaaaaagttgg 18015059  T
211 agtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggct 275  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
18015060 agtttgcagatcctaaagcaaggaggagtgttaatta-ttgctttt-ggactgcattacgtggct 18015122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 239 - 354
Target Start/End: Original strand, 43441329 - 43441445
Alignment:
239 tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatcatttattttcagtcaattagt-gttcatacatttt 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||||| |||| ||| ||||    
43441329 tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctatattagttgttttcagtcaattagtggttcctacctttt 43441428  T
338 aggagcaagtagttgtt 354  Q
    |||||||||||||||||    
43441429 aggagcaagtagttgtt 43441445  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 32529109 - 32529146
Alignment:
207 ttggagtttgcagatcctaaagcaaggaggagtgttaa 244  Q
    |||| |||||||| ||||||||||||||||||||||||    
32529109 ttggtgtttgcagctcctaaagcaaggaggagtgttaa 32529146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 5 - 354
Target Start/End: Original strand, 26257668 - 26258018
Alignment:
5 gacagtcaggcagcaattgcaatttcaaaggatccagtatgtcatgggaggactaaacatttcaacatcaagctctacttcttaagagaggttcaacaaa 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
26257668 gacagtcaggcaacaattgcaatttcaaaggatccagtatgtcatgggaagactaaacatttcaacataaagctctacttcttaagagaggttcaacaaa 26257767  T
105 gtggagaagtcactttggtttattgcagatcagaagagcaactggcagatttatttacaaaaccacttcctgttggcaagtttcagttcttaaggcagaa 204  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
26257768 gtggagaagtcactttggtttattgcagatcaaaagagcaagtggcagatttatttacaaaaccacttcctgttagcaagtttgagttcttaaggcagaa 26257867  T
205 aattggagtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatca 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26257868 aattggagtttgcagatcctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatca 26257967  T
305 ttta-ttttcagtcaattagtgttcatacattttaggagcaagtagttgtt 354  Q
     ||| |||| ||||||||||||||| |||||||||||||||||||||||||    
26257968 gttattttttagtcaattagtgttcctacattttaggagcaagtagttgtt 26258018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 239 - 354
Target Start/End: Complemental strand, 38060857 - 38060742
Alignment:
239 tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatcatttattttcagtcaattagtgttcatacatttta 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||    
38060857 tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatcagttattttcagtcaattagttttcctacatttta 38060758  T
339 ggagcaagtagttgtt 354  Q
    ||||||||||||||||    
38060757 ggagcaagtagttgtt 38060742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 2765376 - 2765461
Alignment:
239 tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatcatttattttcagtcaattagtg 325  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||    
2765376 tgttaattatttgcttttaggactgcattatgtagcttttctttatgtttattttattttgtgtcagtta-tttcagtcaattagtg 2765461  T

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Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 16942652 - 16942767
Alignment:
5 gacagtcaggcagcaattgcaatttcaaaggatccagtatgtcatgggaggactaaacatttcaacatcaagctctacttcttaagagaggttcaacaaa 104  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||  |||||| |||||||    
16942652 gacaatcaggcagcaattgcaatttcaaaggatccagtatgttatgggaagactaaacatttcaatatcaagctctacttcttacaagaggtgcaacaaa 16942751  T
105 gtggagaagtcacttt 120  Q
    ||||||||||||||||    
16942752 gtggagaagtcacttt 16942767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 239 - 354
Target Start/End: Original strand, 16937482 - 16937601
Alignment:
239 tgttaattatttgcttttaggactgcattatgtggcttttctttatgtttattttattctgtatca-ttta--ttttcagtcaattagt-gttcatacat 334  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||  |||||||||| ||| ||| ||||   ||| ||||||||||| |||| |||||    
16937482 tgttaattatttgctttttggactgcattacgtggcttttatttatccttattttattttgtttcagtttagtgttttagtcaattagtggttcctacat 16937581  T
335 tttaggagcaagtagttgtt 354  Q
    ||||||||||||| ||||||    
16937582 tttaggagcaagtggttgtt 16937601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 28394896 - 28394933
Alignment:
207 ttggagtttgcagatcctaaagcaaggaggagtgttaa 244  Q
    |||| |||||||| ||||||||||||||||||||||||    
28394896 ttggtgtttgcagctcctaaagcaaggaggagtgttaa 28394933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 24012252 - 24012141
Alignment:
18 caattgcaatttcaaaggatccagtatgtcatgggaggactaaacatttcaacatcaagctctacttcttaagagaggttcaacaaagtggagaagtcac 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||| ||||  | || |||| ||||||||| ||    
24012252 caattgcaatttcaaaggatccagtatgtcatgggaagactaaacattttaacatcaagctttacttcttacgagaaatgcagcaaaatggagaagtgac 24012153  T
118 tttggtttattg 129  Q
    ||||||||||||    
24012152 tttggtttattg 24012141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 42040039 - 42039989
Alignment:
223 ctaaagcaaggaggagtgttaattatttgcttttaggactgcattatgtggct 275  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
42040039 ctaaagcaaggaggagtgttaatta-ttgctttt-ggactgcattacgtggct 42039989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 6831344 - 6831307
Alignment:
207 ttggagtttgcagatcctaaagcaaggaggagtgttaa 244  Q
    |||| |||||||| ||||||||||||||||||||||||    
6831344 ttggtgtttgcagctcctaaagcaaggaggagtgttaa 6831307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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