View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_42 (Length: 366)
Name: NF1590_low_42
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 29018952 - 29019164
Alignment:
| Q |
5 |
agcagaacctgtgtcaagatattaagtatgctgtagattggggcaatactcatccagggaaggtaatccctatattccttcccctaatactataatattt |
104 |
Q |
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| T |
29018952 |
agcaaaacatgtgtcaagatattaagtatgctgttgattggggcaatactcatccagggaaggtaatccctatattccttcccctaatactataatattt |
29019051 |
T |
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| Q |
105 |
tctcatataaaatgtcaatatatgtctataagtaaagctcaaatgataaaagattggagagaaatttgatatgttgtgacgtgagttcgaactcgcaatt |
204 |
Q |
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| T |
29019052 |
tctcatataaaatgtcaatacatgtctataagtaaagttcaaatgataaaagattggagagacatttgatatgttgtgacgtaagttcgaattcgcaatt |
29019151 |
T |
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| Q |
205 |
ctccatttctttg |
217 |
Q |
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| T |
29019152 |
ctctatttctttg |
29019164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 233 - 351
Target Start/End: Original strand, 29041160 - 29041278
Alignment:
| Q |
233 |
aatgcataattcaacaggcacaagagattggcagagaaggtacaaggttcgttgaagagaacgtaaatatgaaattggtgtatgattatatgttacatct |
332 |
Q |
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| T |
29041160 |
aatgcataattcaacaggcacaagagattggcagagaaggtacaaggttcgttgaagagaacgtaaatatgaaattggtgtatgattatatgttacatct |
29041259 |
T |
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| Q |
333 |
attgactgaatatgcaaat |
351 |
Q |
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| T |
29041260 |
attgactgaatatgcaaat |
29041278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 237 - 350
Target Start/End: Original strand, 29019471 - 29019584
Alignment:
| Q |
237 |
cataattcaacaggcacaagagattggcagagaaggtacaaggttcgttgaagagaacgtaaatatgaaattggtgtatgattatatgttacatctattg |
336 |
Q |
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| T |
29019471 |
cataattcaacaggcagaagagattggcagagaagggacaagattcatagaagagaacgtaaatatgaaattggtgtatgattatatgttacatctattg |
29019570 |
T |
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| Q |
337 |
actgaatatgcaaa |
350 |
Q |
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| T |
29019571 |
actgaatatgcaaa |
29019584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 5 - 197
Target Start/End: Original strand, 29040311 - 29040505
Alignment:
| Q |
5 |
agcagaacctgtgtcaagatattaagtatgctgtagattggggcaatactcatccagggaaggtaatccctatattcc-ttcccctaatactataatatt |
103 |
Q |
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| T |
29040311 |
agcaaaacatgtgtcaagatattaagtatgctgttgattggggcaatacacatccagagaaggtaatccctatattcctttcccgtaatactatagtaat |
29040410 |
T |
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| Q |
104 |
ttctcatataaaatgtcaatatatgtct-ataagtaaagctcaaatgataaaagattggagagaaatttgatatgttgtgacgtgagttcgaact |
197 |
Q |
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| T |
29040411 |
tgctgttataaaatctcaatatatgcctcagaagtatagttcaaacgataaaagattggataaacatttgatattctgggacttgagtttgaact |
29040505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 26919846 - 26919928
Alignment:
| Q |
131 |
tataagtaaagctcaaatgataaaaga-ttggagagaaatttgatatgttgtgacgtgagttcgaactcgcaattctccattt |
212 |
Q |
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| T |
26919846 |
tataagtataactcaaatgataaaaaaattgtaaagatatttgatatgttgggacgtgaggatgaactcacaattctccattt |
26919928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 39992223 - 39992176
Alignment:
| Q |
133 |
taagtaaagctcaaatgataaaagattggagagaaatttgatatgttg |
180 |
Q |
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| T |
39992223 |
taagtaaaactcaaatgataaagaattgcagagaaatttgatatgttg |
39992176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 15091290 - 15091360
Alignment:
| Q |
142 |
ctcaaatgataaaagattggagagaaatttgatatgttgtgacgtgagttcgaactcgcaattctccattt |
212 |
Q |
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| T |
15091290 |
ctcagatggtaaaatattgcaaagacatttgatatgttggggcgtgagtttgaactcacaattctccattt |
15091360 |
T |
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