View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1590_low_43 (Length: 358)
Name: NF1590_low_43
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1590_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 345
Target Start/End: Complemental strand, 48166938 - 48166607
Alignment:
| Q |
14 |
cacattttaccagaaaagcaataatcaataatgctaagatagctatcaccaacattgccaacacaagtttcttcattgatgattctaggttcacaaaacg |
113 |
Q |
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| T |
48166938 |
cacattttaccagaaaagcaataatcaataatgctaagatagctatcaccaacattgccaacacaagtttcttcattgatgattctaggttcacaaaaca |
48166839 |
T |
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| Q |
114 |
aaattatgtcaatttcattgttagtttatttatgacagtctacaccattattagtggtgtatatttttcgtcnnnnnnnntcgtgaaatagactattaaa |
213 |
Q |
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| T |
48166838 |
aaattatgtcaatttcattgttagtttatttatgacaatctacaccattattagtggtgtatatttttcgtcaaaaaaaatcgtgaaatagactattaaa |
48166739 |
T |
|
| Q |
214 |
cggacttaccaaaaagtcaggtcaaaccttaaaaatgagcctatggcagactaataggacagattgaagcctaacattttcaaagcaagtcatgttcagc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48166738 |
cggacttaccaaaaagtcaggtcaaaccttaaaaatgagcctatggcagactaataggacagattgaagcctaacattttcaaagtaagtcatgttcagc |
48166639 |
T |
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| Q |
314 |
ctagcaaagtttaacctagtctattttcacct |
345 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
48166638 |
ctagcaaagtttaacctagtctattttcacct |
48166607 |
T |
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