View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_low_49 (Length: 341)

Name: NF1590_low_49
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_low_49
NF1590_low_49
[»] chr3 (3 HSPs)
chr3 (1-83)||(45391400-45391482)
chr3 (104-177)||(45391295-45391368)
chr3 (241-273)||(45391199-45391231)
[»] chr4 (2 HSPs)
chr4 (109-177)||(734903-734971)
chr4 (241-273)||(734807-734839)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 45391482 - 45391400
Alignment:
Q  1 atataataatactgaaaatgagattataaatagcctttatcatatcatatacctattgaatttgaagtgtattgtagtagtgc 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45391482 atataataatactgaaaatgagattataaatagcctttatcatatcatatacctattgaatttgaagtgtattgtagtagtgc 45391400  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 45391368 - 45391295
Alignment:
Q  104 aaagcagagtccctcttcgaagcttatctcagcagcagagtaacaccaatgggggaggtattgaaagataactc 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45391368 aaagcagagtccctcttcgaagcttatctcagcagcagagtaacaccaatgggggaggtattgaaagataactc 45391295  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 45391231 - 45391199
Alignment:
Q  241 ggcgctgattctgagcaattttattttgtttag 273  Q
    |||||||||||||||||||||||||||||||||    
T  45391231 ggcgctgattctgagcaattttattttgtttag 45391199  T

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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 734971 - 734903
Alignment:
Q  109 agagtccctcttcgaagcttatctcagcagcagagtaacaccaatgggggaggtattgaaagataactc 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  734971 agagtccctcttcgaagcttatctcagcagcagagtaacaccaatgggggaggtattgaaagataactc 734903  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 734839 - 734807
Alignment:
Q  241 ggcgctgattctgagcaattttattttgtttag 273  Q
    |||||||||||||||||||||||||||||||||    
T  734839 ggcgctgattctgagcaattttattttgtttag 734807  T

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