View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1590_low_53 (Length: 324)

Name: NF1590_low_53
Description: NF1590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1590_low_53
NF1590_low_53
[»] chr1 (9 HSPs)
chr1 (19-301)||(20013351-20013627)
chr1 (19-126)||(24968998-24969105)
chr1 (19-126)||(25431592-25431699)
chr1 (184-301)||(24968886-24969003)
chr1 (184-301)||(25431694-25431811)
chr1 (22-123)||(31620800-31620901)
chr1 (88-130)||(23899843-23899885)
chr1 (146-189)||(23899886-23899929)
chr1 (19-47)||(23899822-23899850)
[»] chr8 (1 HSPs)
chr8 (158-195)||(40507089-40507126)


Alignment Details
Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 20013351 - 20013627
Alignment:
Q  19 attcaagccatttatcgaatcccctagttggcgaagacaatcaacaactttttctctcttcaaataaaaccctagtttgataagctgttggtaaatgggg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20013351 attcaagccatttatcgaatcccctagttggcgaagacaatcatcaactttttctctcttcaaataaaaccctagtttgataagctgtttgtaaatgggg 20013450  T
Q  119 caatcggaagtctgagattcgggaacagacggagccggcggtggaggagtgtgtagggagtggtcatcggagacgtccgcga---ccgccgttttcgagg 215  Q
    ||||||||||||               ||||||| ||||||| ||||| | ||||||||||||||||||||  || | | ||   |  ||||||||||||    
T  20013451 caatcggaagtc---------------gacggagacggcggtagaggaatatgtagggagtggtcatcggaatcgccagagatttcgaccgttttcgagg 20013535  T
Q  216 gaacttttttatgtt---gcggcagagactgatcta---cgacggcggctgttttgctccttcttttcccctttcccatggttttgttttgc 301  Q
    |||||||||||||||   ||||||||||||||| ||   || ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20013536 gaacttttttatgttgcggcggcagagactgatatatggcggcggcggcggttttgctccttcttttcccctttcccatggttttgttttgc 20013627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 24969105 - 24968998
Alignment:
Q  19 attcaagccatttatcgaatcccctagttggcgaagacaatcaacaactttttctctcttcaaataaaaccctagtttgataagctgttggtaaatgggg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24969105 attcaagccatttatcgaatcccctagttggcgaagacaatcaacaactttttctctcttcaaataaaaccctagtttgataagctgttggtaaatgggg 24969006  T
Q  119 caatcgga 126  Q
    ||||||||    
T  24969005 caatcgga 24968998  T

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Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 25431592 - 25431699
Alignment:
Q  19 attcaagccatttatcgaatcccctagttggcgaagacaatcaacaactttttctctcttcaaataaaaccctagtttgataagctgttggtaaatgggg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25431592 attcaagccatttatcgaatcccctagttggcgaagacaatcaacaactttttctctcttcaaataaaaccctagtttgataagctgttggtaaatgggg 25431691  T
Q  119 caatcgga 126  Q
    ||||||||    
T  25431692 caatcgga 25431699  T

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Target: chr1; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 184 - 301
Target Start/End: Complemental strand, 24969003 - 24968886
Alignment:
Q  184 atcggagacgtccgcgaccgccgttttcgagggaacttttttatgttgcggcagagactgatctacgacgg---cggctgttttgctccttcttttcccc 280  Q
    ||||||||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  24969003 atcggagacgtccgcgaccg---ttttcgagggaactttttgatgttgcggcagagactgatctacgacggcggcggctgttttgctccttcttttcccc 24968907  T
Q  281 tttcccatggttttgttttgc 301  Q
    |||||||||||||||||||||    
T  24968906 tttcccatggttttgttttgc 24968886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 184 - 301
Target Start/End: Original strand, 25431694 - 25431811
Alignment:
Q  184 atcggagacgtccgcgaccgccgttttcgagggaacttttttatgttgcggcagagactgatctacga---cggcggctgttttgctccttcttttcccc 280  Q
    ||||||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  25431694 atcggagacgtccgcgaccg---ttttcgagggaactttttgatgttgcggcagagactgatctacgacggcggcggctgttttgctccttcttttcccc 25431790  T
Q  281 tttcccatggttttgttttgc 301  Q
    |||||||||||||||||||||    
T  25431791 tttcccatggttttgttttgc 25431811  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 31620800 - 31620901
Alignment:
Q  22 caagccatttatcgaatcccctagttggcgaagacaatcaacaactttttctctcttcaaataaaaccctagtttgataagctgttggtaaatggggcaa 121  Q
    |||| ||||||||||| |||||| | ||| |||||||||  |||| || ||||||||||||||||||||  |||||| ||| |||||||||| |||||||    
T  31620800 caagtcatttatcgaaccccctaatcggcaaagacaatcctcaaccttctctctcttcaaataaaacccccgtttgacaaggtgttggtaaacggggcaa 31620899  T
Q  122 tc 123  Q
    ||    
T  31620900 tc 31620901  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 23899843 - 23899885
Alignment:
Q  88 ccctagtttgataagctgttggtaaatggggcaatcggaagtc 130  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23899843 ccctagtttgataagctgttggtaaatggggcaatcggaagtc 23899885  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 189
Target Start/End: Original strand, 23899886 - 23899929
Alignment:
Q  146 gacggagccggcggtggaggagtgtgtagggagtggtcatcgga 189  Q
    |||||||||| | |||||||||| ||||||||||||||||||||    
T  23899886 gacggagccgactgtggaggagtatgtagggagtggtcatcgga 23899929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 23899822 - 23899850
Alignment:
Q  19 attcaagccatttatcgaatcccctagtt 47  Q
    |||||||||||||||||||||||||||||    
T  23899822 attcaagccatttatcgaatcccctagtt 23899850  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 40507126 - 40507089
Alignment:
Q  158 ggtggaggagtgtgtagggagtggtcatcggagacgtc 195  Q
    |||||||||||| | |||||||||||||||||||||||    
T  40507126 ggtggaggagtgggaagggagtggtcatcggagacgtc 40507089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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